d7d65ade9824fda1d981e1f9692860e243dd76a1
hiram
  Mon Dec 26 21:01:46 2022 -0800
"do not have the same name bash script as doRepeatMasker.pl no redmine

diff --git src/hg/utils/automation/doRepeatModeler.pl src/hg/utils/automation/doRepeatModeler.pl
index 1ac6202..eb7be51 100755
--- src/hg/utils/automation/doRepeatModeler.pl
+++ src/hg/utils/automation/doRepeatModeler.pl
@@ -215,31 +215,31 @@
   # First, make sure previous step has completed:
   if ( ! $opt_debug ) {
     if ( -s "$runDir/run.time" && ! -s "$runDir/${db}-families.fa" ) {
       die "cleanup: previous 'cluster' step appears to be broken, run.time is present but ${db}-families.fa is not present ?";
     }
     if ( ! -s "$runDir/${db}-families.fa" ) {
       die "cleanup previous 'libResult' step has not completed, ${db}-families.fa not present\n";
     }
     # And, verify this step has not run before
     if ( ! -s "$runDir/${db}.fa" ) {
          &HgAutomate::verbose(1, "\ncleanup step previously completed\n");
          return;
     }
   }
   my $whatItDoes = "Cleans up or compresses intermediate files.";
-  my $bossScript = newBash HgRemoteScript("$runDir/doCleanup.bash", $workhorse,
+  my $bossScript = newBash HgRemoteScript("$runDir/modelerCleanup.bash", $workhorse,
 				      $runDir, $whatItDoes);
   $bossScript->add(<<_EOF_
 export asmId="${db}"
 
 if [ ! -s "\${asmId}-families.fa" ]; then
   printf "cleanup expected result file: \${asmId}-families.fa does not exist\n" 1>&2
   exit 255
 fi
 rm -fr \${asmId}.fa \${asmId}.n?? ./err/
 if [ -s "\${asmId}-families.stk" ]; then
   gzip \${asmId}-families.stk
 fi
 c=`ls -d RM_* | wc -l`
 if [ "\${c}" -eq 1 ]; then
    RM_dir=`ls -d RM_*`