fa45027b9591cf32f179047690069902ca70e4b4
galt
  Tue Jan 24 09:39:43 2023 -0800
Revert "Fixing broken make alpha in trackDb buildTrix."

This reverts commit 0c4258fc4b7fc9c00d52336fbdcdf7a652d386d7.

diff --git src/hg/makeDb/trackDb/buildTrix src/hg/makeDb/trackDb/buildTrix
index 542691d..c0e7e48 100755
--- src/hg/makeDb/trackDb/buildTrix
+++ src/hg/makeDb/trackDb/buildTrix
@@ -1,60 +1,58 @@
 #!/bin/bash -e
 usage='buildTrix trixName metaDbName path_to_cv.ra outputMachine outputPath ${DBS}'
 
 if [ $# -lt 6 ] ; then
     echo "wrong # args: $usage" >&2
     exit 1
 fi
 
 trixName="$1"; shift
 metaDbName="$1" ; shift
 cvRaPath="$1" ; shift
 outMachine="$1" ; shift
 outPath="$1" ; shift
 dbs="$@"
 
 # check if a database exists, print note and return non-zero if it doesn't
 dbExists() {
     local db="$1"
     local dbChk=$(hgsql -Ne 'show databases like "'$db'"')
     if [ -z "$dbChk" ] ; then
         echo "Note: database $db does not exist, skipping"
         return 1
     else
         return 0
     fi
 }
 
 buildDbTrix() {
     local db="$1"
     local trixName="$2"
     local metaDbName="$3"
     local cvRaPath="$4"
     local outPath="$5"
     local tmpFile=`mktemp`;
     local tmpFile2=`mktemp`;
     local tmpFile3=`mktemp`;
     makeTrackIndex $db $metaDbName $cvRaPath > $tmpFile;
     if test -s $tmpFile; then
         ixIxx -maxWordLength=64 $tmpFile $tmpFile2 $tmpFile3
         # trixContextIndex makes the $db_$trixName.offsets and $db_$trixName.offsets.ixx files:
-        echo trixContextIndex $tmpFile ${db}_${trixName}
         trixContextIndex $tmpFile ${db}_${trixName}
-        ixIxx -maxWordLength=64 ${db}_${trixName} ${db}_${trixName}.offsets ${db}_${trixName}.offsets.ixx
         chmod 664  $tmpFile2 $tmpFile3 $tmpFile ${db}_${trixName}.offsets ${db}_${trixName}.offsets.ixx
         rsync -a $tmpFile2 $outMachine:$outPath/${db}_${trixName}.ix
         rsync -a $tmpFile3 $outMachine:$outPath/${db}_${trixName}.ixx
         # these three are for snippets on search pages:
         rsync -a $tmpFile $outMachine:$outPath/${db}_${trixName}.txt
         rsync -a ${db}_${trixName}.offsets $outMachine:$outPath/${db}_${trixName}.offsets
         rsync -a ${db}_${trixName}.offsets.ixx $outMachine:$outPath/${db}_${trixName}.offsets.ixx
-        rm -f ${db}_${trixName} ${db}_${trixName}.offsets ${db}_${trixName}.offsets.ixx
+        rm -f ${db}_${trixName}.offsets ${db}_${trixName}.offsets.ixx
     fi
     rm -f $tmpFile $tmpFile2 $tmpFile3
 }
 
 for db in $dbs ; do
     if dbExists $db ; then
         buildDbTrix $db $trixName $metaDbName $cvRaPath $outPath
     fi
 done