Commits for max

v443_preview2 to v443_base (2023-01-23 to 2023-01-30) v443

ad9d2ac60828bebace74450afabb7557410a7fbc Mon Jan 23 12:07:24 2023 -0800

• adding rs prefix to dbSnp ids in clinvar otto job, no redmine, email from Bob
  • src/hg/utils/otto/clinvar/clinVarToBed - lines changed 4, context: html, text, full: html, text

387377eb3982c570bc06728b9e0380c3d1c006ec Wed Jan 25 05:30:25 2023 -0800

• adding linkout to primer3 RT-QPCR primer designer from hgGene, refs #30545
  • src/hg/cgilib/hgSeq.c - lines changed 112, context: html, text, full: html, text
  • src/hg/hgGene/hgGene.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgGene/hgGene.h - lines changed 8, context: html, text, full: html, text
  • src/hg/hgGene/hgGeneData/section.ra - lines changed 5, context: html, text, full: html, text
  • src/hg/hgGene/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/hgGene/primers.c - lines changed 49, context: html, text, full: html, text
  • src/hg/hgGene/sequence.c - lines changed 12, context: html, text, full: html, text
  • src/hg/inc/hCommon.h - lines changed 6, context: html, text, full: html, text
  • src/hg/lib/hCommon.c - lines changed 48, context: html, text, full: html, text

c1880f06222d5757a2d9e1b1ba8f72aa355a672e Thu Jan 26 05:38:33 2023 -0800

• fixing a few MS DOS line endings to get rid of the git warnings in the daily build log, no redmine
  • src/hg/makeDb/doc/chm13v2.0/hub/GCA_009914755.4_T2T-CHM13v2.0_assembly_report.txt - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/makeDb/trackDb/virus/wuhCor1/ConservedAAs.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/makeDb/trackDb/virus/wuhCor1/SNVconservation.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/makeDb/trackDb/virus/wuhCor1/SynConsCodons.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/makeDb/trackDb/virus/wuhCor1/potPathoIndel.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)

bf2f400dcf7342c1f31ca8d946b80ac90bbde89a Fri Jan 27 14:52:07 2023 -0800

• improving error message in table browser, no redmine, email with Lou, Brian, Anna
  • src/hg/hgTables/hgTables.c - lines changed 6, context: html, text, full: html, text