72a519115340ddb42712b0e0b8d29f093be28400
braney
  Thu Jan 12 13:33:54 2023 -0800
add transcript rank to knownGene format GENCODE

diff --git src/hg/lib/gencodeBGP.as src/hg/lib/gencodeBGP.as
index 6e19516..a4c3728 100644
--- src/hg/lib/gencodeBGP.as
+++ src/hg/lib/gencodeBGP.as
@@ -18,17 +18,18 @@
    string cdsEndStat;   "Status of CDS end annotation (none, unknown, incomplete, or complete)"
    int[blockCount] exonFrames; "Exon frame {0,1,2}, or -1 if no frame for exon"
    string type;        "Transcript type"
    string geneName;    "Gene Symbol"
    string geneName2;   "UniProt display ID"
    string geneType;    "Gene type"
 
 # high level type of transcript (from gencodeAttrs)"
    string transcriptClass; "Transcript Class"
    string source; "Source of transcript (from gencodeTranscriptSource)"
    string transcriptType; "BioType of transcript (from gencodeAttrs)"
    string tag; "symbolic tags (from gencodeTags)"
    string level;           "support level, tsl1 is strongest support, tsl5 weakest, NA means not analyzed (from gencodeTranscriptionSupportLevel)"
 # tier:  all, basic, canonical
    string tier;   "Transcript Tier"
+   uint rank;          "Transcript Rank"
    )