72a519115340ddb42712b0e0b8d29f093be28400
braney
  Thu Jan 12 13:33:54 2023 -0800
add transcript rank to knownGene format GENCODE

diff --git src/hg/lib/knownAttrs.sql src/hg/lib/knownAttrs.sql
index 0dc664e..d06b96d 100644
--- src/hg/lib/knownAttrs.sql
+++ src/hg/lib/knownAttrs.sql
@@ -1,21 +1,22 @@
 # knownAttrs.sql was originally generated by the autoSql program, which also 
 # generated knownAttrs.c and knownAttrs.h.  This creates the database representation of
 # an object which can be loaded and saved from RAM in a fairly 
 # automatic way.
 
 #Fields in Gencode attrs table that aren't in kgXref
 CREATE TABLE knownAttrs (
     kgID varchar(255) not null,	# Known Gene ID
     geneId varchar(255) not null,	# ENSG* locus identifier
     geneStatus varchar(255) not null,	# KNOWN or NOVEL
     geneType varchar(255) not null,	# gene function
     transcriptName varchar(255) not null,	# transcript Name
     transcriptType varchar(255) not null,	# transcript Type
     transcriptStatus varchar(255) not null,	# KNOWN or NOVEL or PUTATIVE
     havanaGeneId varchar(255) not null,	# Havana project Id
     ccdsId varchar(255) not null,	# CCDS project Id
     supportLevel varchar(255) not null,	# transcript support level
     transcriptClass varchar(255) not null,	# pseudo, nonCoding, coding, or problem
+    transcriptRank int not null,	# transcript rank
               #Indices
     PRIMARY KEY(kgID)
 );