bebcb6453c54164564b24899c6f407310b551a93
max
  Thu Jan 5 06:37:34 2023 -0800
first go at s3:// support, refs #30445

adding cache file to UDC protocol support, refs #30445

handling expired presigned URLs in udc protocol, refs #30445

diff --git src/lib/verbose.c src/lib/verbose.c
index 9ba41c9..5db9b0f 100644
--- src/lib/verbose.c
+++ src/lib/verbose.c
@@ -1,131 +1,155 @@
 /* verbose.c - write out status messages according to the
  * current verbosity level.  These messages go to stderr. */
 
 /* Copyright (C) 2011 The Regents of the University of California 
  * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 #include "common.h"
 #include "portable.h"
 #include "verbose.h"
+#include "obscure.h"
 
 
 static int logVerbosity = 1;	/* The level of log verbosity.  0 is silent. */
 static FILE *logFile;	/* File to log to. */
 
 static boolean checkedDotsEnabled = FALSE;  /* have we check for dot output
                                              * being enabled? */
 static boolean dotsEnabled = FALSE;         /* is dot output enabled? */
 
+static boolean doHtml = FALSE;
+
 void verboseVa(int verbosity, char *format, va_list args)
 /* Log with at given verbosity vprintf formatted args. */
 {
 if (verbosity <= logVerbosity)
     {
     if (logFile == NULL)
         logFile = stderr;
+    if (doHtml)
+        {
+        char buf[4096];
+        int threadId = get_thread_id();
+        safef(buf, sizeof(buf), "%d %s<br>", threadId, format); // cannot do two printfs, as they are not thread safe, so the <br> will not stay with the line
+        vfprintf(logFile, buf, args);
+        }
+    else
         vfprintf(logFile, format, args);
     fflush(logFile);
     }
 }
 
 void verbose(int verbosity, char *format, ...)
 /* Write printf formatted message to log (which by
  * default is stderr) if global verbose variable
  * is set to verbosity or higher. */
 {
 va_list args;
 va_start(args, format);
 verboseVa(verbosity, format, args);
 va_end(args);
 }
 
 static long lastTime = -1;  // previous call time.
 
 void verboseTimeInit(void)
 /* Initialize or reinitialize the previous time for use by verboseTime. */
 {
 lastTime = clock1000();
 }
 
 void verboseTime(int verbosity, char *label, ...)
 /* Print label and how long it's been since last call.  Start time can be
  * initialized with verboseTimeInit, otherwise the elapsed time will be
  * zero. */
 {
 assert(label != NULL);  // original version allowed this, but breaks some GCCs
 if (lastTime < 0)
     verboseTimeInit();
 long time = clock1000();
 va_list args;
 va_start(args, label);
 verboseVa(verbosity, label, args);
 verbose(verbosity, ": %ld millis\n", time - lastTime);
 lastTime = time;
 va_end(args);
 }
 
 
 boolean verboseDotsEnabled()
 /* check if outputting of happy dots are enabled.  They will be enabled if the
  * verbosity is > 0, stderr is a tty and we don't appear to be running an
  * emacs shell. */
 {
 if (!checkedDotsEnabled)
     {
     if (logFile == NULL)
         logFile = stderr;
     dotsEnabled = (logVerbosity > 0) && isatty(fileno(logFile));
     if (dotsEnabled)
         {
         /* check for an possible emacs shell */
         char *emacs = getenv("emacs");
         char *term = getenv("TERM");
         if ((emacs != NULL) && (emacs[0] == 't'))
             dotsEnabled = FALSE;
         else if ((term != NULL) && sameString(term, "dumb"))
             dotsEnabled = FALSE;
         }
     checkedDotsEnabled = TRUE;
     }
 return dotsEnabled;
 }
 
 void verboseDot()
 /* Write I'm alive dot (at verbosity level 1) */
 {
 if (verboseDotsEnabled())
     verbose(1, ".");
 }
 
 void verboseSetLevel(int verbosity)
 /* Set verbosity level in log.  0 for no logging,
  * higher number for increasing verbosity. */
 {
 logVerbosity = verbosity;
 checkedDotsEnabled = FALSE; /* force rechecking of dots enabled */
 }
 
 int verboseLevel(void)
 /* Get verbosity level. */
 {
 return logVerbosity;
 }
 
 void verboseSetLogFile(char *name)
 /* Set logFile for verbose messages overrides stderr. */
 {
 if (sameString(name, "stdout"))
     logFile = stdout;
 else if (sameString(name, "stderr"))
     logFile = stderr;
 else
     logFile = mustOpen(name, "w");
 }
 
 FILE *verboseLogFile()
 /* Get the verbose log file. */
 {
 if (logFile == NULL)
     logFile = stderr;
 return logFile;
 }
+
+void verboseCgi(char *level) 
+/* Set verbosity level for a CGI: if level is not NULL, set output file to stdout, set verbosity and print a content-type header */
+{
+    if (level==NULL)
+        return;
+    int levelNum = atoi(level);
+    verboseSetLevel(levelNum);
+    verboseSetLogFile("stdout");
+    puts("Content-type: text/html\n");
+    doHtml = TRUE;
+    verbose(0, "Debugging output activated, level %d", levelNum);
+}