035323fe4a88aea8872eb11de17a3800321cf8e7 galt Wed Jan 18 19:59:51 2023 -0800 code cleanup based on htmlCheck output. refs #7914 diff --git src/hg/hgGene/gad.c src/hg/hgGene/gad.c index 6b1393c..816476c 100644 --- src/hg/hgGene/gad.c +++ src/hg/hgGene/gad.c @@ -57,86 +57,86 @@ { sqlSafef(query, sizeof(query), "select k.geneSymbol from kgXref k, gadAll g" " where k.kgId='%s' and k.geneSymbol = g.geneSymbol", geneId); itemName = sqlQuickString(conn, query); showCompleteGadList = FALSE; if (cgiOptionalString("showAllRef") != NULL) { if (sameWord(cgiOptionalString("showAllRef"), "Y") || sameWord(cgiOptionalString("showAllRef"), "y") ) { showCompleteGadList = TRUE; } } currentCgiUrl = cgiUrlString(); - printf("<B>Genetic Association Database (archive): "); + printf("<B>Genetic Association Database (archive): </B>"); printf("<A HREF=\"%s\" target=_blank>", url); - printf("%s</B></A>\n", itemName); + printf("%s</A>\n", itemName); - printf("<BR><B>CDC HuGE Published Literature: "); + printf("<BR><B>CDC HuGE Published Literature: </B>"); printf("<A HREF=\"https://phgkb.cdc.gov/PHGKB/searchSummary.action" "?Mysubmit=Search&firstQuery=%s&__checkbox_gwas=true\" target=_blank>", itemName); - printf("%s</B></A>\n", itemName); + printf("%s</A>\n", itemName); /* List diseases associated with the gene */ sqlSafef(query, sizeof(query), "select distinct broadPhen from gadAll where geneSymbol='%s' and association = 'Y' order by broadPhen", itemName); sr = sqlMustGetResult(conn, query); row = sqlNextRow(sr); if (row != NULL) { upperDisease = replaceChars(row[0], "'", "''"); touppers(upperDisease); printf("<BR><B>Positive Disease Associations: </B>"); printf("<A HREF=\"http://geneticassociationdb.nih.gov\" target=_blank>"); - printf("%s</B></A>\n", row[0]); + printf("%s</A>\n", row[0]); row = sqlNextRow(sr); } while (row != NULL) { upperDisease = replaceChars(row[0], "'", "''"); touppers(upperDisease); printf(", <A HREF=\"http://geneticassociationdb.nih.gov\" target=_blank>"); - printf("%s</B></A>\n", row[0]); + printf("%s</A>\n", row[0]); row = sqlNextRow(sr); } sqlFreeResult(&sr); refPrinted = 0; sqlSafef(query, sizeof(query), "select broadPhen,reference,title,journal, pubMed, conclusion from gadAll where geneSymbol='%s' and association = 'Y' order by broadPhen", itemName); sr = sqlMustGetResult(conn, query); row = sqlNextRow(sr); if (row != NULL) printf("<BR><B>Related Studies: </B><OL>"); while (row != NULL) { printf("<LI><B>%s </B>", row[0]); printf("<br>%s, %s, %s.\n", row[1], row[2], row[3]); if (!sameWord(row[4], "")) { printf(" [PubMed "); printf("<A HREF=\"%s%s%s'\" target=_blank>", "https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=Retrieve&dopt=Abstract&list_uids=", row[4],"&query_hl=1&itool=genome.ucsc.edu"); - printf("%s</B></A>]\n", row[4]); + printf("%s</A>]\n", row[4]); } printf("<br><i>%s</i>\n", row[5]); printf("</LI>\n"); refPrinted++; if ((!showCompleteGadList) && (refPrinted >= 3)) break; row = sqlNextRow(sr); } sqlFreeResult(&sr); printf("</OL>"); if ((!showCompleteGadList) && (row != NULL)) { printf("<B>   more ... </B>"); printf(