035323fe4a88aea8872eb11de17a3800321cf8e7
galt
Wed Jan 18 19:59:51 2023 -0800
code cleanup based on htmlCheck output. refs #7914
diff --git src/hg/hgGene/malaCards.c src/hg/hgGene/malaCards.c
index c33edca..fcad4a0 100644
--- src/hg/hgGene/malaCards.c
+++ src/hg/hgGene/malaCards.c
@@ -1,94 +1,94 @@
/* malaCards - do malaCards section. parts copied from gad.c */
/* Copyright (C) 2013 The Regents of the University of California
* See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
#include "common.h"
#include "hash.h"
#include "linefile.h"
#include "dystring.h"
#include "cheapcgi.h"
#include "spDb.h"
#include "hgGene.h"
#include "hdb.h"
#include "net.h"
static boolean malaCardsExists(struct section *section,
struct sqlConnection *conn, char *geneId)
/* Return TRUE if malaCards table exists and it has an entry with the gene symbol */
{
char query[1024];
char *geneSymbol;
if (sqlTableExists(conn, "malacards") == TRUE)
{
sqlSafef(query, sizeof(query), "select k.geneSymbol from kgXref k, malacards m"
" where k.kgId='%s' and k.geneSymbol = m.geneSymbol", geneId);
geneSymbol = sqlQuickString(conn, query);
if (geneSymbol != NULL) return(TRUE);
}
return(FALSE);
}
static void malaCardsPrint(struct section *section,
struct sqlConnection *conn, char *geneId)
/* Print out malaCards section. */
{
char query[1024];
struct sqlResult *sr;
char **row;
char *itemName;
sqlSafef(query, sizeof(query), "select k.geneSymbol from kgXref k, malacards m"
" where k.kgId='%s' and k.geneSymbol = m.geneSymbol", geneId);
itemName = sqlQuickString(conn, query);
-printf("MalaCards Gene Search: ");
+printf("MalaCards Gene Search: ");
printf("", itemName);
-printf("%s\n", itemName);
+printf("%s\n", itemName);
/* List diseases associated with the gene */
sqlSafef(query, sizeof(query),
"select maladySymbol, urlSuffix, mainName, round(geneScore), isElite from malacards where geneSymbol='%s' order by geneScore desc",
itemName);
sr = sqlMustGetResult(conn, query);
row = sqlNextRow(sr);
if (row != NULL)
printf("
Diseases sorted by gene-association score: ");
int eliteCount = 0;
while (row != NULL)
{
//char *maladySym = row[0];
char *urlSuffix = row[1];
char *mainName = row[2];
char *score = row[3];
char *isElite = row[4];
char *isEliteChar = "";
if (sameWord(isElite, "1"))
{
isEliteChar = "*";
eliteCount += 1;
}
printf("%s%s (%s)",
urlSuffix, mainName, isEliteChar, score);
row = sqlNextRow(sr);
if (row!=NULL)
printf(", ");
}
if (eliteCount!=0)
printf("
* = Manually curated disease association");
sqlFreeResult(&sr);
}
struct section *malaCardsSection(struct sqlConnection *conn,
struct hash *sectionRa)
/* Create malaCards section. */
{
struct section *section = sectionNew(sectionRa, "malacards");
section->exists = malaCardsExists;
section->print = malaCardsPrint;
return section;
}