404562a0949bf43b853017fa20a6fc70d22d4ccc
hiram
  Thu Feb 16 11:43:56 2023 -0800
update to GenArk hubs per user requests refs #29545

diff --git src/hg/makeDb/doc/asmHubs/asmHubs.mk src/hg/makeDb/doc/asmHubs/asmHubs.mk
index 2dca643..ee2d51a 100644
--- src/hg/makeDb/doc/asmHubs/asmHubs.mk
+++ src/hg/makeDb/doc/asmHubs/asmHubs.mk
@@ -7,32 +7,36 @@
 # destDir, srcDir, orderList, indexName, testIndexName,
 # statsName, testStatsName, dataName, testDataName, genomesTxt, hubFile
 # testHubFile, Name and name
 
 toolsDir=${HOME}/kent/src/hg/makeDb/doc/asmHubs
 htdocsHgDownload=/usr/local/apache/htdocs-hgdownload
 hubsDownload=${htdocsHgDownload}/hubs/${name}
 asmHubSrc=/hive/data/genomes/asmHubs/${name}
 
 all:: makeDirs mkGenomes symLinks hubIndex asmStats trackData hubTxt groupsTxt
 
 makeDirs:
 	mkdir -p ${destDir}
 
 mkGenomes::
+	@printf "# starting mkGenomes " 1>&2
+	@date "+%s %F %T" 1>&2
 	${toolsDir}/mkGenomes.pl dynablat-01 4040 ${orderList} > ${destDir}/${genomesTxt}.txt
 	cp -p ${destDir}/${genomesTxt}.txt ${destDir}/download.${genomesTxt}.txt
+	@printf "# finished mkGenomes " 1>&2
+	@date "+%s %F %T" 1>&2
 
 symLinks::
 	${toolsDir}/mkSymLinks.pl ${orderList}
 	@[ -d ${hubsDownload} ] && true || mkdir ${hubsDownload}
 	@for html in ${indexName} ${statsName} ${dataName} ; do \
 [ -L ${hubsDownload}/$${html}.html ] && true || ln -s ${asmHubSrc}/$${html}.html ${hubsDownload} ; \
 [ -L ${hubsDownload}/download.$${html}.html ] && true || ln -s ${asmHubSrc}/download.$${html}.html ${hubsDownload} ; \
 done
 	@for txt in groups hub genomes download.genomes ; do \
 [ -L ${hubsDownload}/$${txt}.txt ] && true || ln -s ${asmHubSrc}/$${txt}.txt ${hubsDownload} ; \
 done
 
 hubIndex::
 	rm -f ${destDir}/${testIndexName}.html ${destDir}/${indexName}.html ${destDir}/download.${indexName}.html
 	${toolsDir}/mkHubIndex.pl ${Name} ${name} ${defaultAssembly} ${orderList} | sed -e 's#${name}/hub.txt#${name}/${hubFile}.txt#;' > ${destDir}/download.${indexName}.html