404562a0949bf43b853017fa20a6fc70d22d4ccc hiram Thu Feb 16 11:43:56 2023 -0800 update to GenArk hubs per user requests refs #29545 diff --git src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt index 475c0e9..da86048 100644 --- src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt +++ src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt @@ -1,66 +1,78 @@ GCA_000001905.1_Loxafr3.0 mammals GCA_000002305.1_EquCab2.0 mammals +GCA_000002595.3_Chlamydomonas_reinhardtii_v5.5 plants +GCA_000002725.2_ASM272v2 invertebrate +GCA_000002875.2_ASM287v2 invertebrate GCA_000003205.6_Btau_5.0.1 mammals GCA_000003625.1_OryCun2.0 mammals GCA_000146795.3_Nleu_3.0 primates +GCA_000147415.1_v_1.0 plants GCA_000151735.1_Cavpor3.0 mammals GCA_000165445.3_Mmur_3.0 primates +GCA_000184155.1_FraVesHawaii_1.0 plants GCA_000208655.2_Dasnov3.0 mammals GCA_000243295.1_TriManLat1.0 mammals GCA_000247695.1_HetGla_female_1.0 mammals GCA_000247795.2_Bos_indicus_1.0 mammals GCA_000258655.2_panpan1.1 primates GCA_000260255.1_OctDeg1.0 mammals GCA_000264685.2_Panu_3.0 primates GCA_000280705.1_JacJac1.0 mammals GCA_000283155.1_CerSimSim1.0 mammals GCA_000292845.1_OchPri3.0 mammals GCA_000296755.1_EriEur2.0 mammals GCA_000311805.2_CB1 mammals GCA_000313985.1_EchTel2.0 mammals GCA_000349665.1_MesAur1.0 mammals GCA_000349705.1_LepWed1.0 mammals GCA_000364345.1_Macaca_fascicularis_5.0 primates +GCA_000365465.3_Ptep_3.0 invertebrate GCA_000409795.2_Chlorocebus_sabeus_1.1 primates GCA_000442215.1_Lipotes_vexillifer_v1 mammals GCA_000464555.1_PanTig1.0 mammals GCA_000471725.1_UMD_CASPUR_WB_2.0 mammals GCA_000493695.1_BalAcu1.0 mammals GCA_000622305.1_S.galili_v1.0 mammals GCA_000687225.1_UrsMar_1.0 mammals GCA_000696695.1_Burgud mammals +GCA_000710875.1_Pepper_Zunla_1_Ref_v1.0 plants +GCA_000741045.2_Vradiata_ver6 plants GCA_000750555.1_ASM75055v1 bacteria GCA_000754665.1_Bison_UMD1.0 mammals GCA_000767525.1_Vi_pacos_V1.0 mammals GCA_000767585.1_PRJNA234474_Ca_dromedarius_V1.0 mammals GCA_000767855.1_Ca_bactrianus_MBC_1.0 mammals GCA_000769185.1_Rrox_v1 primates GCA_000772875.3_Mmul_8.0.1 primates +GCA_000845685.2_ViralProj14462 viral GCA_000952055.2_Anan_2.0 primates GCA_000956105.1_Pcoq_1.0 primates GCA_001305755.1_ASM130575v1 mammals +GCA_001417965.1_Aiptasia_genome_1.1 invertebrate GCA_001443585.1_aciJub1 mammals GCA_001685135.1_ManJav1.0 mammals GCA_001698545.1_ASM169854v1 primates GCA_001704415.1_ARS1 mammals GCA_001857705.1_PanPar1.0 mammals GCA_001890085.1_ASM189008v1 mammals GCA_001922835.1_NIST_Tur_tru_v1 mammals GCA_002007445.1_ASM200744v1 mammals GCA_002007445.2_ASM200744v2 mammals GCA_002102435.1_Ovir.te_1.0 mammals +GCA_002114115.1_ASM211411v1 plants +GCA_002156985.1_Harm_1.0 invertebrate GCA_002201575.1_ASM220157v1 mammals GCA_002288905.2_ASM228890v2 mammals GCA_002288925.2_ASM228892v2 mammals GCA_002754865.1_ASM275486v1 primates GCA_002776525.1_ASM277652v1 primates GCA_002880755.3_Clint_PTRv2 primates GCA_002880775.3_Susie_PABv2 primates GCA_002940915.2_ASM294091v2 mammals GCA_002966995.1_ASM296699v1 mammals GCA_003031525.1_Neophocaena_asiaeorientalis_V1 mammals GCA_003327715.1_PumCon1.0 mammals GCA_003957555.2_bCalAnn1_v1.p birds GCA_003957565.2_bTaeGut1_v1.p birds GCA_004023825.1_VulLag_v1_BIUU mammals GCA_004023905.1_SurSur_v1_BIUU mammals @@ -74,30 +86,31 @@ GCA_004026985.1_MyoMyo_v1_BIUU mammals GCA_004027225.2_bStrHab1.2.pri birds GCA_004027395.1_CanFam_VD_v1_BIUU mammals GCA_004027435.1_ArtJam_v1_BIUU mammals GCA_004027515.1_AntAmePen_v1_BIUU mammals GCA_004027675.1_CasCan_v1_BIUU mammals GCA_004027855.1_ChoDid_v1_BIUU mammals GCA_004027935.1_ChrAsi_v1_BIUU mammals GCA_004115215.3_mOrnAna1.pri.v3 mammals GCA_004115265.2_mRhiFer1_v1.p mammals GCA_004365145.1_OryAfe_v1_BIUU mammals GCA_006229205.1_meerkat_22Aug2017_6uvM2_HiC mammals GCA_007364275.2_fArcCen1 fish GCA_009663435.1_Callithrix_jacchus_cj1700_1.0 primates GCA_009762305.1_mZalCal1.pri mammals +GCA_009764475.1_sPriPec2.pri vertebrate GCA_009764565.1_rDerCor1.pri vertebrate GCA_009769545.1_fCycLum1.pri fish GCA_009769625.1_bCygOlo1.pri birds GCA_009819705.1_fHipHip1.pri fish GCA_009873245.2_mBalMus1.v2 mammals GCA_009914755.4_T2T-CHM13v2.0 primates GCA_010909765.1_sAmbRad1.pri vertebrate GCA_011004845.1_fEsoLuc1.pri fish GCA_011064685.1_ZJU_Sfru_1.0 invertebrate GCA_011100635.1_mTriVul1.pri mammals GCA_011762505.1_mArvNil1.pat.X mammals GCA_011762595.1_mTurTru1.mat.Y mammals GCA_012275295.1_bMelUnd1.mat.Z birds GCA_014905235.2_Bmori_2016v1.0 invertebrate GCA_015227675.2_mRatBN7.2 mammals @@ -114,30 +127,31 @@ GCA_902459505.1_aGeoSer1.1 vertebrate GCA_902500255.1_fThaAma1.1 fish GCA_905147045.1_ilAglIoxx1.1 invertebrate GCA_905147105.1_ilPieBrab1.1 invertebrate GCA_905147365.1_ilAriAges1.1 invertebrate GCA_905147765.2_ilVanAtal1.2 invertebrate GCA_905147795.1_ilPieRapa1.1 invertebrate GCA_905163445.1_ilParAegt1.1 invertebrate GCA_905220365.1_ilVanCard2.1 invertebrate GCA_905220415.1_ilColCroc2.1 invertebrate GCA_905220565.1_ilMelCinx1.1 invertebrate GCA_905237065.2_Ssal_v3.1 fish GCA_905333055.1_ilManJurt1.1 invertebrate GCA_905404315.1_ilLepSina1.1 invertebrate GCA_905475465.1_ilPieNapi1.1 invertebrate +GCA_947179515.1_mApoSyl1.1 mammals GCF_000001405.39_GRCh38.p13 primates GCF_000001405.40_GRCh38.p14 primates GCF_000001635.26_GRCm38.p6 mammals GCF_000001735.3_TAIR10 plants GCF_000002595.1_v3.0 plants GCF_000002995.3_ASM299v2 invertebrate GCF_000004335.2_AilMel_1.0 mammals GCF_000004515.4_Glycine_max_v2.0 plants GCF_000004515.5_Glycine_max_v2.1 plants GCF_000004555.1_ASM455v1 invertebrate GCF_000004665.1_Callithrix_jacchus-3.2 primates GCF_000005975.2_dyak_caf1 invertebrate GCF_000090795.1_v1.0 invertebrate GCF_000143185.1_v1.0 fungi GCF_000149645.2_ASM14964v3 fungi @@ -177,30 +191,31 @@ GCF_000951615.1_common_carp_genome fish GCF_001458135.1_marMar2.1 mammals GCF_001531365.1_CcrdV1 plants GCF_001577835.1_Coturnix_japonica_2.0 birds GCF_001594075.1_Tcor1.0 invertebrate GCF_001633185.1_ValleyOak3.0 plants GCF_001649575.1_ASM164957v1 fish GCF_001659605.1_Manihot_esculenta_v6 plants GCF_001660625.1_IpCoco_1.2 fish GCF_001663975.1_Xenopus_laevis_v2 vertebrate GCF_001687245.1_Rhagoletis_zephyria_1.0 invertebrate GCF_001698545.1_ASM169854v1 primates GCF_001704415.1_ARS1 mammals GCF_001891065.1_H_comes_QL1_v1 fish GCF_002007445.1_ASM200744v2 mammals +GCF_002021735.1_Okis_V1 fish GCF_002162155.1_WEW_v2.0 plants GCF_002201575.1_ASM220157v1 mammals GCF_002263795.1_ARS-UCD1.2 mammals GCF_002706865.1_ASM270686v1 invertebrate GCF_002776525.2_ASM277652v2 primates GCF_002776525.3_ASM277652v3 primates GCF_002870075.1_Lsat_Salinas_v7 plants GCF_002870075.2_Lsat_Salinas_v7 plants GCF_002922805.1_Om_v0.7.RACA fish GCF_002940915.1_ASM294091v2 mammals GCF_002994745.1_RchiOBHm-V2 plants GCF_003031525.1_Neophocaena_asiaeorientalis_V1 mammals GCF_003227715.1_Hsal_v8.5 invertebrate GCF_003584765.1_ASM358476v1 mammals GCF_003668045.1_CriGri-PICR mammals