745fa18179254a7298615ae2b6e1a30a596cbe5f
markd
  Mon Feb 13 14:22:48 2023 -0800
import of GENCODE Versions V43 release

diff --git src/hg/makeDb/doc/hg38/gencode.txt src/hg/makeDb/doc/hg38/gencode.txt
index 0776d67..9aa77a5 100644
--- src/hg/makeDb/doc/hg38/gencode.txt
+++ src/hg/makeDb/doc/hg38/gencode.txt
@@ -1146,30 +1146,34 @@
 
     # edit all.joiner to add ~/tmp/gencodeV42.joiner
 
     jkmake DBS=hg38
 
     # check joiner 
     pushd /hive/data/genomes/hg38/bed/gencodeV42/hgcImport
     make  -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk joinerCheck
 
     # check tracks in browser sandbox
     # commit all
     jkmake DBS=hg38 alpha
 
 #########################################################################
 2022-12-27: import of UCSC GENCODE group processing of GENCODE V43 pre-release for hgc all gencode  (markd)
+2023-02-13: import of UCSC GENCODE group processing of GENCODE V43 release for hgc all gencode  (markd)
+
+    pre-release moved to hgcImportPre, notes revised
+    
     # edit hg/makeDb/outside/gencode/gencodeLoad.mk to set release and ensembl versions
 
     # download, build and load tables
     mkdir -p /hive/data/genomes/hg38/bed/gencodeV43/hgcImport
     pushd /hive/data/genomes/hg38/bed/gencodeV43/hgcImport
 
     (time nice make -O -j 32 -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk) >&build.1.out&
 
     # compare tables from previous release to see if number changed makes
     # sense.  Results are in gencode-cmp.tsv
 
     # generate trackDb and joiner blurb
     pushd ~/kent/src/hg/makeDb/trackDb
     ../outside/gencode/bin/gencodeGenerateTrackDbs hg38 43 109 'Jan 2023'