831e4469f7332b20ec3f6aa30fa6d5884bb5ff89
markd
  Mon Feb 13 19:03:31 2023 -0800
import of GENCODE VM32

diff --git src/hg/makeDb/doc/mm39/gencode.txt src/hg/makeDb/doc/mm39/gencode.txt
index 6dc1257..18ab4f5 100644
--- src/hg/makeDb/doc/mm39/gencode.txt
+++ src/hg/makeDb/doc/mm39/gencode.txt
@@ -294,43 +294,48 @@
 
     # edit mouse/mm39/trackDb.gencode.ra to add new .ra file include
     jkmake DBS=mm39
 
     ## only if being pushed to RR:
     # edit all.joiner to add ~/tmp/gencodeVM31/hgcImport.joiner
     # verify with:
     pushd /hive/data/genomes/mm39/bed/gencodeVM31/hgcImport
     make  -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk joinerCheck
 
     # check tracks in browser sandbox
     # commit all
     jkmake DBS=mm39 alpha
 ##############################################################################
 2022-12-29: import of UCSC GENCODE group processing of GENCODE VM31 pre-release (markd)
+2023-02-13: import of UCSC GENCODE group processing of GENCODE VM31 final release (markd)
+
+    pre-release moved to hgcImportPre, notes revised
+    
+
     # edit hg/makeDb/outside/gencode/gencodeLoad.mk to set release and ensembl versions
     # download, build and load tables
     mkdir -p /hive/data/genomes/mm39/bed/gencodeVM32/hgcImport
     pushd /hive/data/genomes/mm39/bed/gencodeVM32/hgcImport
 
     (time nice make -j 10 -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk) >&build.1.out&
 
     # compare tables from previous release to see if number changed makes
     # sense.  Results are in gencode-cmp.tsv
 
     # generate trackDb and joiner blurb
     pushd ~/kent/src/hg/makeDb/trackDb
-    ../../makeDb/outside/gencode/bin/gencodeGenerateTrackDbs mm39 M32 109 'Jan 2023'
+    ../../makeDb/outside/gencode/bin/gencodeGenerateTrackDbs mm39 M32 109 'Feb 2023'
 
     # edit mouse/mm39/trackDb.gencode.ra to add new .ra file include
     jkmake DBS=mm39
 
     ## only if being pushed to RR:
     # Update 'Release Notes' in
     # mouse/mm39/wgEncodeGencodeSuper.html
 
     # edit all.joiner to add ~/tmp/gencodeVM32/hgcImport.joiner
     # verify with:
     pushd /hive/data/genomes/mm39/bed/gencodeVM32/hgcImport
     make  -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk joinerCheck
 
     # check tracks in browser sandbox
     # commit all