f3e62b71a2cc47befbcd5308b6e1989d4df60f34
markd
  Wed Feb 15 10:38:59 2023 -0800
import of GENCODE V43lift38

diff --git src/hg/makeDb/schema/all.joiner src/hg/makeDb/schema/all.joiner
index 27b41b3..b232655 100644
--- src/hg/makeDb/schema/all.joiner
+++ src/hg/makeDb/schema/all.joiner
@@ -5279,30 +5279,119 @@
     hg19.wgEncodeGencodeUniProtV42lift37.transcriptId dupeOk
     hg19.wgEncodeGencodeAttrsV42lift37.transcriptId minCheck=0.35
 
 identifier wgEncodeGencodeAnnotationRemarkV42lift37
 "Link together Gencode Annotation Remark table with Attributes table"
     hg19.wgEncodeGencodeAnnotationRemarkV42lift37.transcriptId dupeOk
     hg19.wgEncodeGencodeAttrsV42lift37.transcriptId minCheck=0.10
 
 identifier wgEncodeGencodeEntrezGeneV42lift37
 "Link together Gencode UniProt Support table with Attributes table"
     hg19.wgEncodeGencodeEntrezGeneV42lift37.transcriptId dupeOk
     hg19.wgEncodeGencodeEntrezGeneV42lift37.transcriptId minCheck=0.35
 
 # end Gencode V42lift37
 
+# begin Gencode V43lift37
+
+# gencode genePred tables with no associations
+# wgEncodeGencodePolyaV43lift37
+
+# gencode genePred tables with joining through wgEncodeGencodeAttrsV43lift37
+identifier wgEncodeGencodeBasicAttrsV43lift37
+"Link together Gencode Basic Table with Attributes table"
+    hg19.wgEncodeGencodeAttrsV43lift37.transcriptId
+    hg19.wgEncodeGencodeBasicV43lift37.name
+
+identifier wgEncodeGencodeCompAttrsV43lift37
+"Link together Gencode Comprehensive Table with Attributes table"
+    hg19.wgEncodeGencodeAttrsV43lift37.transcriptId
+    hg19.wgEncodeGencodeCompV43lift37.name
+
+identifier wgEncodeGencodePseudoGeneAttrsV43lift37
+"Link together Gencode PseudoGene Table with Attributes table"
+    hg19.wgEncodeGencodeAttrsV43lift37.transcriptId
+    hg19.wgEncodeGencodePseudoGeneV43lift37.name
+
+# gencode association tables (joined through wgEncodeGencodeAttrsV43lift37)
+identifier wgEncodeGencodeGeneSourceV43lift37
+"Link together Gencode Gene Source table with Attributes table"
+    hg19.wgEncodeGencodeGeneSourceV43lift37.geneId
+    hg19.wgEncodeGencodeAttrsV43lift37.geneId
+
+identifier wgEncodeGencodeGeneSymbolV43lift37
+"Link together Gencode gene symbol table with Attributes table"
+    hg19.wgEncodeGencodeGeneSymbolV43lift37.transcriptId dupeOk
+    hg19.wgEncodeGencodeAttrsV43lift37.transcriptId minCheck=0.20
+
+identifier wgEncodeGencodePdbV43lift37
+"Link together Gencode Pdb table with Attributes table"
+    hg19.wgEncodeGencodePdbV43lift37.transcriptId dupeOk
+    hg19.wgEncodeGencodeAttrsV43lift37.transcriptId minCheck=0.015
+
+identifier wgEncodeGencodePubMedV43lift37
+"Link together Gencode Pubmed table with Attributes table"
+    hg19.wgEncodeGencodePubMedV43lift37.transcriptId dupeOk
+    hg19.wgEncodeGencodeAttrsV43lift37.transcriptId  minCheck=0.63
+
+identifier wgEncodeGencodeRefSeqV43lift37
+"Link together Gencode RefSeq table with Attributes table"
+    hg19.wgEncodeGencodeRefSeqV43lift37.transcriptId dupeOk
+    hg19.wgEncodeGencodeAttrsV43lift37.transcriptId minCheck=0.05
+
+identifier wgEncodeGencodeRefSeqToRefGeneV43lift37
+"Link together Gencode RefSeq table with refGene track"
+    hg19.wgEncodeGencodeRefSeqV43lift37.rnaAcc dupeOk chopAfter=.
+    hg19.refGene.name minCheck=0.77
+
+identifier wgEncodeGencodeTagV43lift37
+"Link together Gencode Tag table with Attributes table"
+    hg19.wgEncodeGencodeTagV43lift37.transcriptId dupeOk
+    hg19.wgEncodeGencodeAttrsV43lift37.transcriptId minCheck=0.36
+
+identifier wgEncodeGencodeTranscriptSourceV43lift37
+"Link together Gencode Transcript Source table with Attributes table"
+    hg19.wgEncodeGencodeTranscriptSourceV43lift37.transcriptId
+    hg19.wgEncodeGencodeAttrsV43lift37.transcriptId
+
+identifier wgEncodeGencodeTranscriptSupportV43lift37
+"Link together Gencode Transcript Support table with Attributes table"
+    hg19.wgEncodeGencodeTranscriptSupportV43lift37.transcriptId dupeOk
+    hg19.wgEncodeGencodeAttrsV43lift37.transcriptId minCheck=0.04
+
+identifier wgEncodeGencodeTranscriptionSupportLevelV43lift37
+"Link together Gencode Transcription Support Level table with Attributes table"
+    hg19.wgEncodeGencodeTranscriptionSupportLevelV43lift37.transcriptId dupeOk
+    hg19.wgEncodeGencodeAttrsV43lift37.transcriptId minCheck=0.30
+
+identifier wgEncodeGencodeUniProtV43lift37
+"Link together Gencode UniProt Support table with Attributes table"
+    hg19.wgEncodeGencodeUniProtV43lift37.transcriptId dupeOk
+    hg19.wgEncodeGencodeAttrsV43lift37.transcriptId minCheck=0.35
+
+identifier wgEncodeGencodeAnnotationRemarkV43lift37
+"Link together Gencode Annotation Remark table with Attributes table"
+    hg19.wgEncodeGencodeAnnotationRemarkV43lift37.transcriptId dupeOk
+    hg19.wgEncodeGencodeAttrsV43lift37.transcriptId minCheck=0.10
+
+identifier wgEncodeGencodeEntrezGeneV43lift37
+"Link together Gencode UniProt Support table with Attributes table"
+    hg19.wgEncodeGencodeEntrezGeneV43lift37.transcriptId dupeOk
+    hg19.wgEncodeGencodeEntrezGeneV43lift37.transcriptId minCheck=0.35
+
+# end Gencode V43lift37
+
 # begin Gencode VM2
 
 # gencode genepreds with no associations
 # wgEncodeGencodePolyaVM2
 # wgEncodeGencode2wayConsPseudoVM2
 
 # gencode genepreds with joining through wgEncodeGencodeAttrsVM2
 identifier wgEncodeGencodeBasicAttrsVM2
 "Link together Gencode Basic Table with Attributes table"
     mm10.wgEncodeGencodeAttrsVM2.transcriptId
     mm10.wgEncodeGencodeBasicVM2.name
 
 identifier wgEncodeGencodeCompAttrsVM2
 "Link together Gencode Comprehensive Table with Attributes table"
     mm10.wgEncodeGencodeAttrsVM2.transcriptId