We would like to thank the Genome -Research Consortium for creating the patches for hg38. We would also like to thank Galt Barber, +Reference Consortium for creating the patches for hg38. We would also like to thank Galt Barber, Jairo Navarro, and Gerardo Perez at UCSC for implementing and testing the latest patch to the hg38 genome.
A new 470-way Multiz Alignment & Conservation track has been added to the human (GRCh38/hg38) genome browser. The composite track displays multiple alignments (Multiz) and measurements of evolutionary conservation (phastCons and phyloP) for 470 mammals.
We would like to thank the Genome -Research Consortium for creating the patches for hg38. We would also like to thank Galt Barber, +Reference Consortium for creating the patches for hg38. We would also like to thank Galt Barber, Jairo Navarro, and Gerardo Perez at UCSC for implementing and testing the latest patch to the hg38 genome.
We are pleased to announce the release of the JASPAR Transcription Factors tracks for human assemblies hg19/GRCh37 and hg38/GRCh38.
These data represent genome-wide predicted binding sites for TF (transcription factor) binding profiles in the JASPAR CORE collection. This collection is an open-source database containing a curated, non-redundant set of binding profiles derived from published collections of experimentally defined transcription factor binding sites for eukaryotes. @@ -2012,31 +2012,31 @@ tasks, a version called "analysisSet" for the human genome.
We would like to thank the Genome -Research Consortium for creating the patches for mm10. We would also like to thank Galt Barber +Reference Consortium for creating the patches for mm10. We would also like to thank Galt Barber and Jairo Navarro at UCSC for implementing and testing the latest patch to the mm10 genome.
A genome browser is now available for the Xenopus tropicalis assembly released in Nov. 2019 by the University of California, Berkeley (UCB_Xtro_10.0).
More information on how patch sequences are incorporated can be found on the Patching up the Genome blog post. The blog post contains details about the new /latest download directory on the downloads server. With the addition of new sequences to hg19, we can expect to see BLAT return more matches to the genome.
Also, with these patches, the hg19 genome is not optimal anymore for aligners. So we added an "analysis set" version of the hg19 genome fasta file to our bigZips directory, and indexes for BWA, Bowtie2, and Hisat2.
-We would like to thank the Genome Research Consortium for creating the patches to hg19. We would +We would like to thank the Genome Reference Consortium for creating the patches to hg19. We would also like to thank Angie Hinrichs and Jairo Navarro at UCSC for implementing and testing the latest patch to hg19.
We are pleased to announce a new track, RefSeq Select+MANE, for the GRCh38/hg38 human assembly. This track is a combination of NCBI transcripts with the RefSeq Select tag, as well as transcripts with the MANE Select tag. The result is a track with a single representative transcript for every protein-coding gene. The track can be found as part of the NCBI RefSeq composite track.
RefSeq Select transcripts are chosen by an NCBI pipeline to be representative of every protein-coding