eea1ea7511ae244feb7c92616d0d463896dc851d
hiram
  Thu Feb 2 13:22:59 2023 -0800
send assemblyTable and requestTable listings out to hgdownload no redmine

diff --git src/hg/gar/rebuild.sh src/hg/gar/rebuild.sh
index 4b8578c..a1c66a6 100755
--- src/hg/gar/rebuild.sh
+++ src/hg/gar/rebuild.sh
@@ -1,35 +1,40 @@
 #!/bin/bash
 
-
-
 set -beEu -o pipefail
 
 if [ $# -ne 1 ]; then
   printf "usage: rebuild.sh makeItSo\n" 1>&2
   exit 255
 fi
 
 if [ "$1" != "makeItSo" ]; then
   printf "usage: rebuild.sh makeItSo\n" 1>&2
   exit 255
 fi
 
 export srcDir="$HOME/kent/src/hg/gar"
 export dateStamp=`date "+%F"`
 export workDir="/hive/data/outside/ncbi/genomes/gar/$dateStamp"
 
 if [ ! -d "${workDir}" ]; then
   mkdir "${workDir}"
 fi
 
 printf "$workDir\n"
 cd "${workDir}"
 printf "### running time ucscEquiv.sh ###\n"
 time $srcDir/ucscEquiv.sh
 printf "### running time garTable.sh ###\n"
 time $srcDir/garTable.sh > next.html 2> ${dateStamp}.log
 rm -f index.html
 mv next.html index.html
 chmod +x index.html
+rm -f assemblyTable.txt requestTable.txt
+for F in `ls -rt *.tableData.txt`
+do
+   awk -F$'\t' '$2 == "view"' "${F}" | cut -f1,3- >> assemblyTable.txt
+   awk -F$'\t' '$2 == "request"' "${F}" | cut -f1,3- >> requestTable.txt
+done
+scp -p assemblyTable.txt requestTable.txt qateam@hgdownload:/mirrordata/hubs/
 printf "### finished ###\n"
 printf "# %s/index.html\n" "${workDir}"