a3681e7888030cebc1023f74d77158862dd39a51 hiram Tue Jan 31 11:45:57 2023 -0800 catching up a number of recent additions no redmine diff --git src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt index b61b45d..6fc7ba2 100644 --- src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt +++ src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt @@ -17,30 +17,31 @@ GCA_000292845.1_OchPri3.0 mammals GCA_000296755.1_EriEur2.0 mammals GCA_000311805.2_CB1 mammals GCA_000313985.1_EchTel2.0 mammals GCA_000349665.1_MesAur1.0 mammals GCA_000349705.1_LepWed1.0 mammals GCA_000364345.1_Macaca_fascicularis_5.0 primates GCA_000409795.2_Chlorocebus_sabeus_1.1 primates GCA_000442215.1_Lipotes_vexillifer_v1 mammals GCA_000464555.1_PanTig1.0 mammals GCA_000471725.1_UMD_CASPUR_WB_2.0 mammals GCA_000493695.1_BalAcu1.0 mammals GCA_000622305.1_S.galili_v1.0 mammals GCA_000687225.1_UrsMar_1.0 mammals GCA_000696695.1_Burgud mammals +GCA_000750555.1_ASM75055v1 bacteria GCA_000754665.1_Bison_UMD1.0 mammals GCA_000767525.1_Vi_pacos_V1.0 mammals GCA_000767585.1_PRJNA234474_Ca_dromedarius_V1.0 mammals GCA_000767855.1_Ca_bactrianus_MBC_1.0 mammals GCA_000769185.1_Rrox_v1 primates GCA_000772875.3_Mmul_8.0.1 primates GCA_000952055.2_Anan_2.0 primates GCA_000956105.1_Pcoq_1.0 primates GCA_001305755.1_ASM130575v1 mammals GCA_001443585.1_aciJub1 mammals GCA_001685135.1_ManJav1.0 mammals GCA_001698545.1_ASM169854v1 primates GCA_001704415.1_ARS1 mammals GCA_001857705.1_PanPar1.0 mammals GCA_001890085.1_ASM189008v1 mammals @@ -86,77 +87,82 @@ GCA_009764565.1_rDerCor1.pri vertebrate GCA_009769545.1_fCycLum1.pri fish GCA_009769625.1_bCygOlo1.pri birds GCA_009819705.1_fHipHip1.pri fish GCA_009873245.2_mBalMus1.v2 mammals GCA_010909765.1_sAmbRad1.pri vertebrate GCA_011004845.1_fEsoLuc1.pri fish GCA_011064685.1_ZJU_Sfru_1.0 invertebrate GCA_011100635.1_mTriVul1.pri mammals GCA_011762505.1_mArvNil1.pat.X mammals GCA_011762595.1_mTurTru1.mat.Y mammals GCA_012275295.1_bMelUnd1.mat.Z birds GCA_014905235.2_Bmori_2016v1.0 invertebrate GCA_015227675.2_mRatBN7.2 mammals GCA_020740725.1_bCorHaw1.pri.cur birds +GCA_020740795.1_bApuApu2.pri.cur birds GCA_900006655.3_Susie3 primates GCA_900094665.2_CAROLI_EIJ_v1.1 mammals GCA_900324465.2_fAnaTes1.2 fish GCA_900634415.1_fCotGob3.1 fish GCA_900634775.1_fGouWil2.1 fish GCA_901343595.1_MONAX5 mammals GCA_901699155.1_bStrTur1.1 birds GCA_901709675.1_fSynAcu1.1 fish GCA_902459505.1_aGeoSer1.1 vertebrate GCA_902500255.1_fThaAma1.1 fish GCA_905147045.1_ilAglIoxx1.1 invertebrate GCA_905147105.1_ilPieBrab1.1 invertebrate GCA_905147365.1_ilAriAges1.1 invertebrate GCA_905147765.2_ilVanAtal1.2 invertebrate GCA_905147795.1_ilPieRapa1.1 invertebrate GCA_905163445.1_ilParAegt1.1 invertebrate GCA_905220365.1_ilVanCard2.1 invertebrate GCA_905220415.1_ilColCroc2.1 invertebrate GCA_905220565.1_ilMelCinx1.1 invertebrate GCA_905237065.2_Ssal_v3.1 fish GCA_905333055.1_ilManJurt1.1 invertebrate GCA_905404315.1_ilLepSina1.1 invertebrate GCA_905475465.1_ilPieNapi1.1 invertebrate +GCF_000001405.39_GRCh38.p13 primates +GCF_000001405.40_GRCh38.p14 primates GCF_000001635.26_GRCm38.p6 mammals +GCF_000001735.3_TAIR10 plants GCF_000002595.1_v3.0 plants GCF_000002995.3_ASM299v2 invertebrate GCF_000004335.2_AilMel_1.0 mammals GCF_000004515.4_Glycine_max_v2.0 plants GCF_000004515.5_Glycine_max_v2.1 plants GCF_000004555.1_ASM455v1 invertebrate GCF_000004665.1_Callithrix_jacchus-3.2 primates GCF_000005975.2_dyak_caf1 invertebrate GCF_000090795.1_v1.0 invertebrate GCF_000143185.1_v1.0 fungi GCF_000149645.2_ASM14964v3 fungi GCF_000164845.3_VicPac3.1 mammals GCF_000165045.1_Callorhinchus_milii-6.1.3 vertebrate GCF_000188115.4_SL3.0 plants GCF_000189315.1_Devil_ref_v7.0 mammals GCF_000208655.1_Dasnov3.0 mammals GCF_000215625.1_MusPutFur1.0 mammals GCF_000231095.1_Oryza_brachyantha.v1.4b plants GCF_000235385.1_SaiBol1.0 primates GCF_000236235.1_SpeTri2.0 mammals GCF_000241765.3_Chrysemys_picta_bellii-3.0.3 vertebrate GCF_000255335.1_Mocc_1.0 invertebrate GCF_000264685.3_Panu_3.0 primates +GCF_000300575.1_Agabi_varbisH97_2 fungi GCF_000340665.1_C.cajan_V1.0 plants GCF_000341935.1_Ccin1 invertebrate GCF_000344595.1_CheMyd_1.0 vertebrate GCF_000364345.1_Macaca_fascicularis_5.0 primates GCF_000365465.2_Ptep_2.0 invertebrate GCF_000471905.2_AMTR1.0 plants GCF_000511025.2_RefBeet-1.2.2 plants GCF_000687205.1_ASM68720v1 birds GCF_000690535.1_ASM69053v1 birds GCF_000691845.1_ASM69184v1 birds GCF_000695815.1_ASM69581v1 birds GCF_000699005.1_ASM69900v1 birds GCF_000699245.1_ASM69924v1 birds GCF_000700745.1_ASM70074v1 birds GCF_000709325.1_ASM70932v1 birds