21f4b0da7fe6f8d64ba6d67cabb4bb464df44112 hiram Tue Jan 31 12:21:53 2023 -0800 correct symlink to ../trackData/ not to ../trackDb/ no redmine diff --git src/hg/utils/automation/asmHubChainNetTrackDb.sh src/hg/utils/automation/asmHubChainNetTrackDb.sh index 9dcc899..2bc48fc 100755 --- src/hg/utils/automation/asmHubChainNetTrackDb.sh +++ src/hg/utils/automation/asmHubChainNetTrackDb.sh @@ -55,31 +55,31 @@ rm -f $buildDir/bbi/${asmId}.chainSyn${OtherDb}Link.bb rm -f $buildDir/bbi/${asmId}.chainRBest$OtherDb.bb rm -f $buildDir/bbi/${asmId}.chainRBest${OtherDb}Link.bb rm -f $buildDir/bbi/${asmId}.chainLiftOver$OtherDb.bb rm -f $buildDir/bbi/${asmId}.chainLiftOver${OtherDb}Link.bb rm -f $buildDir/bbi/${asmId}.$otherDb.net.bb rm -f $buildDir/bbi/${asmId}.$otherDb.net.summary.bb rm -f $buildDir/bbi/${asmId}.$otherDb.synNet.bb rm -f $buildDir/bbi/${asmId}.$otherDb.synNet.summary.bb rm -f $buildDir/bbi/${asmId}.$otherDb.rbestNet.bb rm -f $buildDir/bbi/${asmId}.$otherDb.rbestNet.summary.bb rm -f $buildDir/bbi/${asmId}.$otherDb.liftOverNet.bb rm -f $buildDir/bbi/${asmId}.$otherDb.liftOverNet.summary.bb rm -f $buildDir/liftOver/${overToChain} if [ -s "$buildDir/trackData/$lastzDir/axtChain/${overChain}" ]; then - ln -s ../trackDb/$lastzDir/axtChain/${overChain} $buildDir/liftOver/${overToChain} + ln -s ../trackData/$lastzDir/axtChain/${overChain} $buildDir/liftOver/${overToChain} fi if [ -s "$buildDir/trackData/$lastzDir/axtChain/chain${OtherDb}.bb" ]; then ln -s ../trackData/$lastzDir/axtChain/chain${OtherDb}.bb $buildDir/bbi/${asmId}.chain$OtherDb.bb ln -s ../trackData/$lastzDir/axtChain/chain${OtherDb}Link.bb $buildDir/bbi/${asmId}.chain${OtherDb}Link.bb fi if [ -s "$buildDir/trackData/$lastzDir/bigMaf/$accessionId.$otherDb.net.bb" ]; then ln -s ../trackData/$lastzDir/bigMaf/$accessionId.$otherDb.net.bb $buildDir/bbi/${asmId}.$otherDb.net.bb ln -s ../trackData/$lastzDir/bigMaf/$accessionId.$otherDb.net.summary.bb $buildDir/bbi/${asmId}.$otherDb.net.summary.bb fi if [ -s "$buildDir/trackData/$lastzDir/axtChain/chainSyn${OtherDb}.bb" ]; then ln -s ../trackData/$lastzDir/axtChain/chainSyn${OtherDb}.bb $buildDir/bbi/${asmId}.chainSyn$OtherDb.bb ln -s ../trackData/$lastzDir/axtChain/chainSyn${OtherDb}Link.bb $buildDir/bbi/${asmId}.chainSyn${OtherDb}Link.bb fi if [ -s "$buildDir/trackData/$lastzDir/bigMaf/$accessionId.$otherDb.synNet.bb" ]; then ln -s ../trackData/$lastzDir/bigMaf/$accessionId.$otherDb.synNet.bb $buildDir/bbi/${asmId}.$otherDb.synNet.bb