105fed4179457f1d6ae6fb3daa94cd0cd0270451 hiram Thu Feb 2 12:48:45 2023 -0800 catch up with current crontab in otto user no redmine diff --git src/hg/utils/otto/otto.crontab src/hg/utils/otto/otto.crontab index 81dd16c..b467435 100644 --- src/hg/utils/otto/otto.crontab +++ src/hg/utils/otto/otto.crontab @@ -44,31 +44,31 @@ # PanelApp MAILTO=max@soe.ucsc.edu,lrnassar@ucsc.edu 10 10 * * 2 /hive/data/outside/otto/panelApp/updatePanelApp #DECIPHER - Reactivated 5/13/2022 by Lou 11 4 * * * /hive/data/outside/otto/decipher/decipherWrapper.sh #GWAS Catalog 41 4 * * 3 /hive/data/outside/otto/gwas/gwasWrapper.sh #GeneReviews 00 8 * * 2 /hive/data/outside/otto/geneReviews/geneReviewsWrapper.sh #LRG -57 9 1 4,6,12 * /hive/data/outside/otto/lrg/lrgWrapper.sh +57 9 1 * * /hive/data/outside/otto/lrg/lrgWrapper.sh #dbVar 13 8 2 * * /hive/data/outside/otto/dbVar/dbVarWrapper.sh #Orphanet 10 7 10 * * /hive/data/outside/otto/orphanet/orphanetWrapper.sh #ClinVar MAILTO=max@soe.ucsc.edu,lrnassar@ucsc.edu 08 00 8 * * umask 002; /hive/data/outside/otto/clinvar/doUpdate.sh #OMIM 17 4 * * * /hive/data/outside/otto/omim/omimWrapper.sh 2>&1 #LOVD @@ -89,20 +89,26 @@ 33 09 * * * /hive/data/outside/otto/grcIncidentDb/runUpdate.sh makeItSo #NCBI RefSeq MAILTO=lrnassar@ucsc.edu,hiram@soe.ucsc.edu 23 8 * * 3 /hive/data/outside/otto/ncbiRefSeq/ottoNcbiRefSeq.sh #Index page public session thumbnails update MAILTO=lrnassar@ucsc.edu,gperez2@ucsc.edu 11 1 * * 4 /cluster/software/bin/python3.6 /cluster/bin/scripts/buildPublicSessionThumbnailsIndexPage.py /usr/local/apache/htdocs/ #OMIM Upload MAILTO=lrnassar@ucsc.edu HGDB_CONF=/cluster/home/otto/.hg.conf.beta 15 05 * * * /hive/data/outside/otto/omim/omimUploadWrapper.sh + +# UniProt massive 110+ database update, takes 3-4 days. +#Format: Minute - Hour - DayofMonth month Day-of-week +MAILTO=max@soe.ucsc.edu,lrnassar@ucsc.edu +00 11 16 * * /hive/data/outside/otto/uniprot/doUpdate.sh run + MAILTO=bwick@ucsc.edu # Cell Browser news sec update by Matt/Brittney Sept 2022 04 12 * * 1-5 ~bwick/cellBrowser/ucsc/updateNewsSec -r #Format: Minute - Hour - DayofMonth month Day-of-week