267f04e1dd82e71c871c9dfb465e2d3b1aa5617e
hiram
  Fri Feb 10 09:53:48 2023 -0800
add a bit more output in the failing case to help identify it and update GRCh38 to patch 14 no redmine

diff --git src/hg/utils/otto/grcIncident/runUpdate.sh src/hg/utils/otto/grcIncident/runUpdate.sh
index 633495d..7cf3d9f 100755
--- src/hg/utils/otto/grcIncident/runUpdate.sh
+++ src/hg/utils/otto/grcIncident/runUpdate.sh
@@ -24,48 +24,55 @@
 # echo "WARN: ${TOP}/runUpdate.sh is disabled" \
 # 	| mail -s "ALERT: GRC Incident update" ${failMail} \
 # 	    > /dev/null 2> /dev/null
 # exit $?
 
 cd ${TOP}
 
 export DS=`date "+%Y-%m-%d"`
 export YM=`date "+%Y/%m"`
 
 for D in GRCh37 GRCh38 GRCm38 Zv9 MGSCv37 GRCz10 GRCz11 Gallus_gallus-5.0 GRCg6a
 do
   mkdir -p ${D}/log/${YM}
 done
 
-./grcUpdate.sh GRCh38 hg38 GRCh38.p13_issues human/GRC/Issue_Mapping \
+./grcUpdate.sh GRCh38 hg38 GRCh38.p14_issues human/GRC/Issue_Mapping \
   > GRCh38/log/${YM}/${DS}.txt 2>&1
 
 ./grcUpdate.sh GRCh37 hg19 GRCh37.p13_issues human/GRC/Issue_Mapping \
   > GRCh37/log/${YM}/${DS}.txt 2>&1
 
 ./grcUpdate.sh GRCm38 mm10 GRCm38.p6_issues mouse/GRC/Issue_Mapping \
   > GRCm38/log/${YM}/${DS}.txt 2>&1
 
 ./grcUpdate.sh Zv9 danRer7 Zv9_issues zebrafish/GRC/Issue_Mapping \
   > Zv9/log/${YM}/${DS}.txt 2>&1
 
 ./grcUpdate.sh MGSCv37 mm9 MGSCv37_issues mouse/GRC/Issue_Mapping \
   > MGSCv37/log/${YM}/${DS}.txt 2>&1
 
 ./grcUpdate.sh GRCz10 danRer10 GRCz10_issues zebrafish/GRC/Issue_Mapping \
   > GRCz10/log/${YM}/${DS}.txt 2>&1
 
 ./grcUpdate.sh GRCz11 danRer11 GRCz11_issues zebrafish/GRC/Issue_Mapping \
   > GRCz11/log/${YM}/${DS}.txt 2>&1
 
 ./grcUpdate.sh GRCg6a galGal6 GRCg6a_issues chicken/GRC/Issue_Mapping \
   > GRCg6a/log/${YM}/${DS}.txt 2>&1
 
 ./grcUpdate.sh Gallus_gallus-5.0 galGal5 Gallus_gallus-5.0_issues \
     chicken/GRC/Issue_Mapping > Gallus_gallus-5.0/log/${YM}/${DS}.txt 2>&1
 
 WC=`tail --quiet --lines=1 ${TOP}/GRCg6a/log/${YM}/${DS}.txt ${TOP}/GRCh37/log/${YM}/${DS}.txt ${TOP}/GRCh38/log/${YM}/${DS}.txt ${TOP}/GRCm38/log/${YM}/${DS}.txt ${TOP}/GRCz10/log/${YM}/${DS}.txt ${TOP}/GRCz11/log/${YM}/${DS}.txt ${TOP}/Gallus_gallus-5.0/log/${YM}/${DS}.txt ${TOP}/MGSCv37/log/${YM}/${DS}.txt ${TOP}/Zv9/log/${YM}/${DS}.txt | grep SUCCESS | wc -l`
 if [ "${WC}" -ne 9 ]; then
     ${ECHO} "incidentDb/runUpdate.sh failing" 1>&2
     ${ECHO} "WC: ${WC} <- should be nine" 1>&2
+    for T in ${TOP}/GRCg6a/log/${YM}/${DS}.txt ${TOP}/GRCh37/log/${YM}/${DS}.txt ${TOP}/GRCh38/log/${YM}/${DS}.txt ${TOP}/GRCm38/log/${YM}/${DS}.txt ${TOP}/GRCz10/log/${YM}/${DS}.txt ${TOP}/GRCz11/log/${YM}/${DS}.txt ${TOP}/Gallus_gallus-5.0/log/${YM}/${DS}.txt ${TOP}/MGSCv37/log/${YM}/${DS}.txt ${TOP}/Zv9/log/${YM}/${DS}.txt
+    do
+       c=`tail --lines=1 "${T}" | grep SUCCESS | wc -l`
+       if [ "${c}" -ne 1 ]; then
+          printf "# failing %s\n" "${T}" 1>&2
+       fi
+    done
     exit 255
 fi