b211be496cb00c0899c46fa90d70181efe41bef6 jcasper Mon Feb 6 16:20:57 2023 -0800 Removing EPS output links for hgTracks/hgGenome, refs #30606 diff --git src/hg/htdocs/goldenPath/help/hgTracksHelp.html src/hg/htdocs/goldenPath/help/hgTracksHelp.html index 0945abe..fe657f6 100755 --- src/hg/htdocs/goldenPath/help/hgTracksHelp.html +++ src/hg/htdocs/goldenPath/help/hgTracksHelp.html @@ -732,56 +732,54 @@ <ul> <li> change the track display mode</li> <li> zoom in or out to the exact position coordinates of the feature</li> <li> highlight the feature</li> <li> open the "Get DNA for..." link for the feature's coordinates</li> <li> display details about the feature </li> <li> open a popup window to configure the track's display of the feature</li> <li> display the entire tracks image in a separate window for inclusion in spreadsheets or other - documents. The Genome Browser <a href="#print">PDF/PS</a> option under the View menu + documents. The Genome Browser <a href="#print">PDF</a> option under the View menu can also be used to generate a high-quality annotation tracks image suitable for printing.</li> </ul> <p> To use the right-click feature, make sure your internet browser allows the display of popup windows from genome.ucsc.edu. When enabled, the right-click navigation feature replaces the default contextual popup menu typically displayed by the Internet browser when a user right-clicks on the tracks image. A few combinations of the Mozilla Firefox browser on Mac OS do not support the right-click menu functionality using secondary click; in these instances, ctrl+left-click must be used to display the menu.</p> <h3 id="print">Printing a copy of the annotation track window</h3> <p> The Genome Browser provides a mechanism for saving a copy of the currently displayed annotation -tracks image to a file that can be printed or edited. Images saved in PostScript format can be -printed at high resolution and edited by drawing programs such as Adobe Illustrator. This is useful -for generating figures intended for publication. Images can also be saved in PDF format for viewing -by Adobe Acrobat Reader.</p> +tracks image to a PDF file that can be printed or edited by drawing programs such as Adobe +Illustrator or Inkscape. This is useful for generating figures intended for publication.</p> <p> To print or save the image to a file: <ol> <li> In the blue navigation bar at the top of the screen, from the "View" menu, click the - "PDF/PS" link.</li> + "PDF" link.</li> <li> - Click one of the PDF or EPS links.</li> + Click one of the PDF links.</li> </ol> <p> NOTE: If you have configured your browser image to use one of the larger font sizes, the text in the resulting screen shot may not display correctly. If you encounter this problem, reduce the Genome Browser font size using the <a href="#TRACK_CONFIG">Configuration utility</a>, then repeat the save/print process.</p> <!-- =======BLAT======= --> <a name="BLATAlign"></a> <h2>Using BLAT alignments</h2> <p> BLAT (BLAST-Like Alignment Tool) is a very fast sequence alignment tool similar to BLAST. For more information on BLAT's internal scoring schemes and its overall n-mer alignment seed strategy, refer to W. James Kent (2002) <a href="http://www.genome.org/cgi/content/abstract/12/4/656" target="_blank">BLAT - The BLAST-Like Alignment Tool</a>, <em>Genome Res</em> 12:4 656-664.</p>