Commits for angie

v445_preview2 to v445_base (2023-03-06 to 2023-03-13) v445

d936f6666770ec1a86f10344a828dceb213ee6f8 Wed Mar 8 10:41:48 2023 -0800

• Add public tree download limited to 6M sequences for ShUShER so it doesn't run out of browser mem.
  • src/hg/utils/otto/sarscov2phylo/extractPublicTree.sh - lines changed 7, context: html, text, full: html, text

a9106d91accc695dc149bca8976342aa84e82179 Wed Mar 8 10:42:20 2023 -0800

• A few new lineages.
  • src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv - lines changed 4, context: html, text, full: html, text

4dc2ce3ec067b4ccb7987cbda16289d165954971 Thu Mar 9 20:04:39 2023 -0800

• Translate multiple changes to the same codon correctly, collecting all mutations on the path from root to node.
  • src/hg/hgPhyloPlace/phyloPlace.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgPhyloPlace/phyloPlace.h - lines changed 2, context: html, text, full: html, text
  • src/hg/hgPhyloPlace/treeToAuspiceJson.c - lines changed 117, context: html, text, full: html, text
  • src/inc/common.h - lines changed 5, context: html, text, full: html, text
  • src/lib/common.c - lines changed 15, context: html, text, full: html, text