Commits for braney

v445_preview2 to v445_base (2023-03-06 to 2023-03-13) v445

40a345b04f483a7e67494e62afc8528675eb587e Mon Mar 6 12:06:43 2023 -0800

• make sure alignment blockse are single coverage over the query.
  • src/hg/hgTracks/pslTrack.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgTracks/snake.c - lines changed 46, context: html, text, full: html, text
  • src/hg/hgTracks/snake.h - lines changed 1, context: html, text, full: html, text

06571741ba5844ec3dfaba611d3ce29970fa6b0b Wed Mar 8 13:11:22 2023 -0800

• adding back a couple of lines that were inadvertantly deleted in da6e1451531ba0147ba54f531361515e55fde9af
  • src/hg/lib/hgMaf.c - lines changed 2, context: html, text, full: html, text

0a01f6a29963ba42555b02782532a5702b649f29 Fri Mar 10 10:18:36 2023 -0800

• first cut at drawing base probability logos in wiggle tracks calculated at run time using an associated MAF related
  • src/hg/hgTracks/wigCommon.h - lines changed 1, context: html, text, full: html, text
  • src/hg/hgTracks/wigTrack.c - lines changed 99, context: html, text, full: html, text
  • src/hg/inc/hgMaf.h - lines changed 15, context: html, text, full: html, text
  • src/hg/lib/hgMaf.c - lines changed 50, context: html, text, full: html, text

9f0511672e907484b4ef9cfbec085bb7651f0f18 Fri Mar 10 11:45:20 2023 -0800

• don't print out the "Variant Review Status" on the submission page
  • src/hg/makeDb/trackDb/human/trackDb.clinvar.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 1, context: html, text, full: html, text

5cda54b32e44c89a0f49cf6e4e2d72f898d86ad9 Sat Mar 11 10:07:37 2023 -0800

• for multiWig defined logo wiggle, use the track colors instead of hardcoded values
  • src/hg/hgTracks/wigTrack.c - lines changed 21, context: html, text, full: html, text