File Changes for hiram

v445_preview2 to v445_base (2023-03-06 to 2023-03-13) v445

• src/hg/makeDb/doc/asmHubs/master.run.list
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    6b9e9cccaa743133f2ab4c4cb33c91460888f094 Mon Mar 13 08:58:40 2023 -0700
    adding GCA_002270425.1_ASM227042v1 Starmerella bacillaris per user request refs #29545
• src/hg/makeDb/doc/bacteriaAsmHub/bacteria.orderList.tsv
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    6b9e9cccaa743133f2ab4c4cb33c91460888f094 Mon Mar 13 08:58:40 2023 -0700
    adding GCA_002270425.1_ASM227042v1 Starmerella bacillaris per user request refs #29545
• src/hg/makeDb/doc/birdsAsmHub/birds.orderList.tsv
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    e981dbff9d0656a9a01d582356d85bf14f6cb2aa Mon Mar 6 11:34:24 2023 -0800
    catching up RefSeq assemblies refs #29545
• src/hg/makeDb/doc/fishAsmHub/fish.orderList.tsv
  • lines changed 12, context: html, text, full: html, text
    954602fdbb9b230ed81e5e2d06ac0b64dc9aaf10 Mon Mar 6 13:14:54 2023 -0800
    updated RefSeq assemblies refs #29545
• src/hg/makeDb/doc/fungiAsmHub/fungi.orderList.tsv
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    b40982ea80ba60973910dc0c893d5af8da2cdfa0 Mon Mar 6 10:55:04 2023 -0800
    catching up RefSeq assemblies about 53 refs #29545
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    4c906212d302408f36c2125bebce52a92f350ff6 Mon Mar 6 15:34:32 2023 -0800
    remove duplicate assembly definitions refs #29545
• src/hg/makeDb/doc/legacyAsmHub/legacy.orderList.tsv
  • lines changed 11, context: html, text, full: html, text
    2f2d6d5555249fcbaf0ae7b53274f6d322a2c7e3 Mon Mar 6 14:57:38 2023 -0800
    RefSeq update moves some assemblies to legacy refs #29545
• src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv
  • lines changed 10, context: html, text, full: html, text
    1d56173dc8704419bb08be3c2c84bcfc26bc6d44 Mon Mar 6 13:55:56 2023 -0800
    catching up RefSeq assemblies refs #29545
• src/hg/makeDb/doc/plantsAsmHub/plants.orderList.tsv
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    be45faeff1eb804c8290bf3a1afb25de900b51ef Mon Mar 6 14:35:14 2023 -0800
    catching up RefSeq assemblies refs #29545
• src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv
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    e31bab9ce9d88c6d651529dd55d7bab39a8aaac8 Mon Mar 6 16:40:51 2023 -0800
    Ugandan red Colobus v4 moved to legacy refs #29545
• src/hg/makeDb/doc/vertebrateAsmHub/vertebrate.orderList.tsv
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    f63fe3ded78e7532c09a857fc96e9d6d7e0ba245 Mon Mar 6 14:47:15 2023 -0800
    catching up RefSeq assemblies and fixup names refs #29545
• src/hg/makeDb/trackDb/mouse/mm10/liftOverMm39.html
  • lines changed 43, context: html, text, full: html, text
    ff02c6f3e8bcc0a791b5f4ec2ed5100e0b137fbd Mon Mar 6 16:43:20 2023 -0800
    adding liftOver mm10 mm39 tracks refs #30736
• src/hg/makeDb/trackDb/mouse/mm10/liftOverMm39.ra
  • lines changed 12, context: html, text, full: html, text
    ff02c6f3e8bcc0a791b5f4ec2ed5100e0b137fbd Mon Mar 6 16:43:20 2023 -0800
    adding liftOver mm10 mm39 tracks refs #30736
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    401fac4f62d7d4d2b88647e65144629c7927f3b3 Mon Mar 6 16:48:56 2023 -0800
    adding lift over tracks for mm10 to mm39 and mm39 to mm10 refs #30736
• src/hg/makeDb/trackDb/mouse/mm39/liftOverMm10.html
  • lines changed 43, context: html, text, full: html, text
    ff02c6f3e8bcc0a791b5f4ec2ed5100e0b137fbd Mon Mar 6 16:43:20 2023 -0800
    adding liftOver mm10 mm39 tracks refs #30736
• src/hg/makeDb/trackDb/mouse/mm39/liftOverMm10.ra
  • lines changed 12, context: html, text, full: html, text
    ff02c6f3e8bcc0a791b5f4ec2ed5100e0b137fbd Mon Mar 6 16:43:20 2023 -0800
    adding liftOver mm10 mm39 tracks refs #30736
• src/hg/makeDb/trackDb/mouse/mm39/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    401fac4f62d7d4d2b88647e65144629c7927f3b3 Mon Mar 6 16:48:56 2023 -0800
    adding lift over tracks for mm10 to mm39 and mm39 to mm10 refs #30736
• src/hg/utils/otto/grcIncident/runUpdate.sh
  • lines changed 8, context: html, text, full: html, text
    4fe29cc807f90b379abec789ccd1f2512ac2dbdb Mon Mar 6 21:53:10 2023 -0800
    adding GRCm39 to the update list refs #30735