bc6d8c0971e27f2c535c7e9cb6c103d5ee9c15d0
lrnassar
  Thu Feb 23 15:27:55 2023 -0800
Squashing old pennantIcons and updating some GENCODE ones, refs #30657

diff --git src/hg/makeDb/trackDb/human/panelApp.ra src/hg/makeDb/trackDb/human/panelApp.ra
index 3d2984c..97e65d6 100644
--- src/hg/makeDb/trackDb/human/panelApp.ra
+++ src/hg/makeDb/trackDb/human/panelApp.ra
@@ -1,54 +1,53 @@
 track panelApp
 shortLabel PanelApp
 longLabel Genomics England PanelApp Diagnostics
 type bigBed 9 +
 visibility hide
 group phenDis
-pennantIcon New red ../goldenPath/newsarch.html#102422 "Released at UCSC on Oct 24, 2022"
 compositeTrack on
 
     track panelAppGenes
     parent panelApp on
     shortLabel PanelApp Genes
     longLabel Genomics England PanelApp Genes
     type bigBed 9 +
     visibility pack
     bigDataUrl /gbdb/$D/panelApp/genes.bb
     itemRgb on
     url https://panelapp.genomicsengland.co.uk/panels/$<panelID>/gene/$<geneSymbol>/
     urlLabel Link to PanelApp
     urls omimGene="https://www.omim.org/entry/$$" ensemblGenes="https://ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=$$" hgncID="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:$$" panelID="https://panelapp.genomicsengland.co.uk/panels/$$/" geneSymbol="https://panelapp.genomicsengland.co.uk/panels/entities/$$"
     mouseOverField mouseOverField
     labelFields geneSymbol
     skipEmptyFields on
     skipFields chrom,chromStart,blockStarts,blockSizes,entityName,tags,status,mouseOverField
     filterValues.confidenceLevel 3,2,1,0
 
     track panelAppTandRep
     parent panelApp on
     shortLabel PanelApp STRs
     longLabel Genomics England PanelApp Short Tandem Repeats
     type bigBed 9 +
     visibility pack
     bigDataUrl /gbdb/$D/panelApp/tandRep.bb
     itemRgb on
     urls omimGene="https://www.omim.org/entry/$$" ensemblID="https://ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=$$" hgncID="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:$$" panelID="https://panelapp.genomicsengland.co.uk/panels/$$/" geneSymbol="https://panelapp.genomicsengland.co.uk/panels/entities/$$"
     mouseOverField mouseOverField
     labelFields hgncSymbol
     skipEmptyFields on
     skipFields chrom,chromStart,blockStarts,blockSizes,mouseOverField
     filterValues.confidenceLevel 3,2,1,0
 
     track panelAppCNVs
     parent panelApp on
     shortLabel PanelApp CNVs
     longLabel Genomics England PanelApp CNV Regions
     type bigBed 9 +
     visibility pack
     bigDataUrl /gbdb/$D/panelApp/cnv.bb
     itemRgb on
     urls omimGene="https://www.omim.org/entry/$$" panelID="https://panelapp.genomicsengland.co.uk/panels/$$/" entityName="https://panelapp.genomicsengland.co.uk/panels/entities/$$"
     labelFields entityName
     skipEmptyFields on
     skipFields chrom,chromStart,blockStarts,blockSizes
     filterValues.confidenceLevel 3,2,1,0