f8d1ee9294ec18a6d876796a23632bfe5292a733 angie Thu Mar 2 16:57:35 2023 -0800 Adding a couple more reversions in XBC, pointed out by @corneliusroemer in p-d 1100 diff --git src/hg/utils/otto/sarscov2phylo/branchSpecificMask.yml src/hg/utils/otto/sarscov2phylo/branchSpecificMask.yml index b725f92..d3b89af 100644 --- src/hg/utils/otto/sarscov2phylo/branchSpecificMask.yml +++ src/hg/utils/otto/sarscov2phylo/branchSpecificMask.yml @@ -130,17 +130,19 @@ XBB.1: # Inherits from XBB # Here I'm going a bit past the technical start of XBB.1, to include G27915T to be more sure # that it's XBB.1 before we mask out the defining mutation of XBB.1 representative: England/LSPA-32578111/2022 reversions: [ T22317G ] XBB.1.5: # Inherits from XBB.1 # Don't believe reversions on 27915 once we're as far as XBB.1.* representative: England/BRBR-326C0A5A/2023 reversions: [ T27915G ] XBC: # Inherits nothing! Should find out its deletions. + # Cornelius Roemer requested to mask several reversions in + # https://github.com/cov-lineages/pango-designation/issues/1100#issuecomment-1426502678 representative: Philippines/PH-VUI-142736/2022 - reversions: [ G5584A, T13019C, T25000C, T28271A ] + reversions: [ G5584A, T13019C, T22329C, T25000C, C27718T, T28271A ]