72ed3a859583339f4178ff91515f758c59aaba2d gperez2 Wed Mar 29 16:54:52 2023 -0700 Announcing the release of the updated DGV tracks for hg19/hg38, refs #25566 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 832c874..9edee73 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -51,30 +51,53 @@ </div> <p>You can sign-up to get these announcements via our <a target=_blank href="https://groups.google.com/a/soe.ucsc.edu/g/genome-announce?hl=en">Genome-announce</a> email list. We send around one short announcement email every two weeks.</p> <p>Smaller software changes are not announced here. A summary of the three-weekly release changes can be <a target=_blank href="https://genecats.gi.ucsc.edu/builds/versions.html">here</a>. For the full list of our daily code changes head to <a href="https://github.com/ucscGenomeBrowser/kent/commits/master" target=_blank>our GitHub page</a>.</p> <!-- ============= 2023 archived news ============= --> <a name="2023"></a> +<a name="032923"></a> +<h2>Mar. 29, 2023 Updated DGV tracks for hg19/hg38</h2> +<p> +We are pleased to announce an update to the DGV tracks for the +<a href="/cgi-bin/hgTrackUi?db=hg38&g=dgvPlus" target="_blank">hg38</a> and +<a href="/cgi-bin/hgTrackUi?db=hg19&g=dgvPlus" target="_blank">hg19</a> human assemblies. The +tracks display copy number variants (CNVs), insertions/deletions (InDels), inversions and inversion +breakpoints annotated by the +<a href="http://dgv.tcag.ca/dgv/app/home" target="_blank">Database of Genomic Variants</a> (DGV), +which contains genomic variations observed in healthy individuals. For the hg38 update, the +Structural Variant Regions track now has 825,343 total variants and the Supporting Structural +Variants track now has 7,270,185 total variants. For the hg19 update, Structural Variant Regions track now has +826,661 total variants and the Supporting Structural Variants track now has 7,346,512 total variants. More +information on these tracks can be found on the +<a href="/cgi-bin/hgTrackUi?db=hg38&g=dgvPlus#TRACK_HTML" target="_blank">track description page</a>. +</p> +<p> +We would like to thank the Database of Genomic Variants for making these data available. We would also +like to thank Jairo Navarro, Max Haeussler, Anna Benet-Pages, and Gerardo Perez for their efforts +on this release. +</p> + + <a name="030823"></a> <h2>Mar. 8, 2023 TOGA Gene Prediction tracks for 41 assemblies</h2> <p> We are happy to announce the release of the <b>TOGA</b> (<b>T</b>ool to infer <b>O</b>rthologs from <b>G</b>enome <b>A</b>lignments) gene prediction tracks for 41 assemblies. TOGA is a homology-based method that integrates gene annotation, inferring orthologs and classifying genes as intact or lost. The full list of assemblies containing the TOGA gene prediction tracks is displayed below: </p> <p> <div class="container"> <div class="row"> <div class="col-sm-4"> <ul> <li>Brown kiwi <a href="/cgi-bin/hgTrackUi?db=aptMan1&g=HLTOGAannotvGalGal6v1&position=default" target="_blank">(aptMan1)</a></li>