72ed3a859583339f4178ff91515f758c59aaba2d gperez2 Wed Mar 29 16:54:52 2023 -0700 Announcing the release of the updated DGV tracks for hg19/hg38, refs #25566 diff --git src/hg/makeDb/trackDb/human/hg19/defaultPriority.ra src/hg/makeDb/trackDb/human/hg19/defaultPriority.ra index 5b7f3a3..7b239df 100644 --- src/hg/makeDb/trackDb/human/hg19/defaultPriority.ra +++ src/hg/makeDb/trackDb/human/hg19/defaultPriority.ra @@ -1,101 +1,104 @@ # Genes and Gene Predictions # track knownGene override # priority 1 # This priority is defined in human/hg19/trackDb.ra # If this priority changes, please change it here and there as well # Phenotype and Literature track pubs override group phenDis priority 1 # mRNA and EST track mrna override group rna priority 5.1 visibility hide track intronEst override priority 12 visibility hide # Regulation # track wgEncodeReg override # priority 1 # This priority is defined in human/hg19/wgEncodeReg.ra # If this priority changes, please change it here and there as well # Comparative Genomics # track cons100way override # priority 1 # This priority is defined in human/hg19/trackDb.100way.ra # If this priority changes, please change it here and there as well # Variation # track snp146Common override # priority 1 # This priority is defined in human/trackDb.ra # If this priority changes, please change it here and there as well track dgvPlus override group varRep visibility hide #type bigBed 9 + html dgvPlusGold +pennantIcon Updated red ../goldenPath/newsarch.html#032823 "Updated Mar. 29, 2023" track dgvMerged override parent dgvPlus on type bigBed 9 + bigDataUrl /gbdb/hg19/dgv/dgvMerged.bb filter._size 1:9734324 filterByRange._size on filterLabel._size Genomic size of variant filterValues.varType complex,deletion,duplication,gain,gain+loss,insertion,inversion,loss,mobile element insertion,novel sequence insertion,sequence alteration,tandem duplication dataVersion 2020-02-25 searchIndex name + pennantIcon Updated red ../goldenPath/newsarch.html#032923 "Updated Mar. 29, 2023" track dgvSupporting override parent dgvPlus type bigBed 9 + bigDataUrl /gbdb/hg19/dgv/dgvSupporting.bb filter._size 1:9320633 filterByRange._size on filterLabel._size Genomic size of variant filterValues.varType complex,deletion,duplication,gain,gain+loss,insertion,inversion,loss,mobile element insertion,novel sequence insertion,sequence alteration,tandem duplication dataVersion 2020-02-25 searchIndex name + pennantIcon Updated red ../goldenPath/newsarch.html#032923 "Updated Mar. 29, 2023" track dgvGold parent dgvPlus shortLabel DGV Gold Standard longLabel Database of Genomic Variants: Gold Standard Variants bigDataUrl /gbdb/hg19/dgv/dgvGold.bb type bigBed 12 url http://dgv.tcag.ca/gb2/gbrowse_details/dgv2_hg19?ref=$S;start=${;end=$};name=$$;class=Sequence searchIndex name searchTable dgvGold searchType bigBed searchDescription DGV Gold Variants searchTable dgvMerged searchType bigBed searchMethod exact searchDescription DGV Merged Variants searchTable dgvSupporting searchType bigBed searchMehtod exact searchDescription DGV Supporting Variants # Repeats track rmsk override group rep priority 1