c2613e3ae4bd2d87e4636f0f8f2fd7edade5f567 hiram Wed Mar 29 15:45:48 2023 -0700 adding assemblies requested by users refs #29545 diff --git src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv index 88b4456..8e730f1 100644 --- src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv +++ src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv @@ -164,58 +164,63 @@ GCF_000524195.1_ASM52419v1 flatworm E.granulosus GCA_002269645.1_Mlig_3_7 flatworm M.lignano (DV1 2017) GCF_000699445.2_SchHae_2.0 flatworm S.haematobium GCF_000237925.1_ASM23792v2 flatworm S.mansoni GCF_019202785.1_ASM1920278v2 fleshy prawn (Huanghai No. 1 2021) GCF_018902025.1_UCI_dwil_1.1 flies (14030-0811.24 2021) GCF_003227725.1_Cflo_v7.5 Florida carpenter ant GCF_000003815.2_Bfl_VNyyK Florida lancelet GCF_014529535.1_BU_Bcop_v1 fly B.coprophila GCF_001853355.1_ASM185335v1 fly B.latifrons GCF_024586455.1_APGP_CSIRO_Bneo_wtdbg2-racon-allhic-juicebox.fasta_v2 flies B.neohumeralis (Rockhampton 2022) GCF_009650485.1_drosAlbom15112-1751.03v1 fly D.albomicans GCF_017639315.1_ASM1763931v2 fly D.ananassae (14024-0371.13 U. Maryland 2021) GCF_003285975.2_DanaRS2.1 fly D.ananassae (14024-0371.16-18 U. Chicago 2018) GCF_001654025.1_ASM165402v1 fly D.arizonae +GCA_005876895.1_DaztRS1 fly D.azteca (UCSD 14012-1071.03 2019) GCF_000233415.1_Dbia_2.0 fly D.biarmipes (BCM 2013) GCF_018148935.1_ASM1814893v1 fly D.biarmipes (Stanford 2021) GCF_000236285.1_Dbip_2.0 fly D.bipectinata (BCM 2013) GCF_018153845.1_ASM1815384v1 fly D.bipectinata (Stanford 2021) GCF_011750605.1_ASM1175060v1 fly D.busckii GCF_000224195.1_Dele_2.0 fly D.elegans (Baylor 2013) GCF_018152505.1_ASM1815250v1 fly D.elegans (Stanford 2021) GCF_003286155.1_DereRS2 fly D.erecta GCF_000236325.1_Deug_2.0 fly D.eugracilis (modENCODE 2013) GCF_018153835.1_ASM1815383v1 fly D.eugracilis (Stanford 2021) GCF_000220665.1_Dfic_2.0 fly D.ficusphila (BCM 2013) GCF_018152265.1_ASM1815226v1 fly D.ficusphila (Stanford 2021) GCF_000005155.2_dgri_caf1 fly D.grimshawi (Agencourt 2006) GCF_018153295.1_ASM1815329v1 fly D.grimshawi (Stanford 2021) GCF_900245975.1_DGUA_6 fly D.guanche GCF_003285905.1_DhydRS2 fly D.hydei -GCF_004354385.1_UK_Dinn_1.0 fly D.innubila +GCF_004354385.1_UK_Dinn_1.0 fly D.innubila (TH190305 2019 refseq) +GCA_004354385.2_ASM435438v2 fly D.innubila (TH190305 2020 genbank) GCF_000224215.1_Dkik_2.0 fly D.kikkawai (Baylor 2013) GCF_018152535.1_ASM1815253v1 fly D.kikkawai (Stanford 2021) +GCA_008121275.1_UCBerk_Dlow_1.0 fly D.lowei (Jillo6 2019) GCF_004382145.1_ASM438214v1 fly D.mauritiana GCF_000001215.4_Release_6_plus_ISO1_MT fly D.melanogaster GCF_003369915.1_D.miranda_PacBio2.1 fly D.miranda GCF_000005175.2_dmoj_caf1 fly D.mojavensis (Agencourt 2006) GCF_018153725.1_ASM1815372v1 fly D.mojavensis (Stanford 2021) GCF_001654015.2_UFRJ_Dnav_4.2 fly D.navojoa +GCA_024703675.1_RU_Dneb_q3p fly D.nebulosa (14030-0761.06 2022) GCF_003285875.2_DnovRS2.1 fly D.novamexicana GCF_018151105.1_ASM1815110v1 fly D.obscura (Stanford 2021) GCF_002217835.1_Dobs_1.0 fly D.obscura 14011-0151.01 +GCA_005876975.1_DoreRS1 fly D.orena (14021-0245.01 2019) GCF_003286085.1_DperRS2 fly D.persimilis GCF_009870125.1_UCI_Dpse_MV25 fly D.pseudoobscura GCF_000236305.1_Drho_2.0 fly D.rhopaloa (modENCODE 2013) GCF_018152115.1_ASM1815211v1 fly D.rhopaloa (Stanford 2021) GCF_016746245.2_Prin_Dsan_1.1 fly D.santomea (v1.1 2021) GCF_004382195.2_ASM438219v2 fly D.sechellia (sech25 v2 2019 UC Irvine) GCF_002093755.1_Dser1.0 fly D.serrata GCF_016746395.2_Prin_Dsim_3.1 fly D.simulans (w501 v3.1 2021) GCF_008121235.1_UCBerk_Dsub_1.0 fly D.subobscura GCF_014743375.2_RU_Dsub_v1.1 fly D.subpulchrella GCF_013340165.1_LBDM_Dsuz_2.1.pri fly D.suzukii GCF_000224235.1_Dtak_2.0 fly D.takahashii (BCM 2013) GCF_018152695.1_ASM1815269v1 fly D.takahashii (Stanford 2021) GCF_016746235.2_Prin_Dtei_1.1 fly D.teissieri GCF_003285735.1_DvirRS2 fly D.virilis @@ -267,30 +272,31 @@ GCF_000002845.2_ASM284v2 Leishmania braziliensis (MHOM/BR/75/M2904 2011 kinetoplastids) GCF_000227135.1_ASM22713v2 Leishmania donovani (BPK282A1 2011 kinetoplastids) GCF_000002875.2_ASM287v2 Leishmania infantum (JPCM5 2011 kinetoplastids refseq) GCF_000002725.2_ASM272v2 Leishmania major (Friedlin 2011 kinetoplastids refseq) GCF_000234665.1_ASM23466v4 Leishmania mexicana (MHOM/GT/2001/U1103 2011 kinetoplastids) GCF_000755165.1_ASM75516v1 Leishmania panamensis (MHOM/PA/94/PSC-1 2014 kinetoplastids) GCA_009770625.1_UL_Ltar_1.0 Leishmania tarentolae (Parrot-TarII 2019) GCF_001293395.1_ASM129339v1 Leptomonas pyrrhocoris (H10 2015 kinetoplastids) GCF_000956235.1_wasmannia.A_1.0 little fire ant GCF_000184785.3_Aflo_1.1 little honeybee GCA_012273795.1_ASM1227379v1 masson pine moth GCA_902829235.1_CLODIP2 mayflies C.dipterum (2020) GCF_905333055.1_ilManJurt1.1 meadow brown (refseq 2021) GCF_000347755.3_Ccap_2.1 Mediterranean fruit fly GCF_000806345.2_ASM80634v2 melon fly (v2 USDA-PBARC White Pupae T1 2014) +GCF_028554725.1_idZeuCucr1.2 melon fly (PBARC_wt_2022May primary hap 2023) GCF_028408465.1_idAnaLude1.1 Mexican fruit fly (Willacy primary hap 2023) GCF_023375885.1_qqDerAnde1.2 mites & ticks D.andersoni (2022) GCF_013339745.2_BIME_Dsil_1.4 mites & ticks D.silvarum (Dsil-2018 2022) GCF_002532875.1_vjacob_1.0 mites & ticks V.jacobsoni (VJ856 2017) GCF_009731565.1_Dplex_v4 monarch butterfly GCF_013758885.1_VT_AalbS3_pri_1.0 mosquito A.albimanus (STELCA 2020) GCF_943734665.1_idAnoAquaMG_Q_19 mosquito A.aquasalis (2022) GCF_016920715.1_AaraD3 mosquito A.arabiensis (DONGOLA 2021) GCF_943734685.1_AcolN3 mosquito A.coluzzii (2022) GCF_016920705.1_AcolMOP1 mosquito A.coluzzi (MOPTI 2021) GCF_943734695.1_idAnoMacuDA_375_x mosquito A.maculipalpis (2022) GCF_017562075.2_AmerM5.1 mosquito A.merus (MAF 2021) GCA_910591435.1_ilAcrAcer1.1 moth A.aceris GCA_910594945.1_ilAmpBerb1.1 moth A.berbera GCA_905333075.2_ilAteCent1.2 moth A.centrago