7c0c6f08b3e53af0c02ec2f198ef1592584dccd9
hiram
  Sat Apr 1 19:18:30 2023 -0700
correctly remove rmsk.customLib.fa.gz link refs #30508

diff --git src/hg/utils/automation/asmHubTrackDb.sh src/hg/utils/automation/asmHubTrackDb.sh
index a019e3f..726496f 100755
--- src/hg/utils/automation/asmHubTrackDb.sh
+++ src/hg/utils/automation/asmHubTrackDb.sh
@@ -208,30 +208,31 @@
   rm -f "$buildDir/${asmId}.repeatMasker.version.txt"
   rm -f $buildDir/bbi/${asmId}.rmsk.align.bb
   rm -f $buildDir/bbi/${asmId}.rmsk.bb
   rm -f $buildDir/${asmId}.fa.align.tsv.gz
   rm -f $buildDir/${asmId}.fa.join.tsv.gz
   rm -f $buildDir/${asmId}.rmsk.customLib.fa.gz
 else
 
 rm -f $buildDir/$asmId.repeatMasker.out.gz
 ln -s trackData/repeatMasker/$asmId.sorted.fa.out.gz $buildDir/$asmId.repeatMasker.out.gz
 if [ -s "$buildDir/trackData/repeatMasker/versionInfo.txt" ]; then
    rm -f "$buildDir/${asmId}.repeatMasker.version.txt"
    ln -s trackData/repeatMasker/versionInfo.txt "$buildDir/${asmId}.repeatMasker.version.txt"
 fi
 if [ -s "$buildDir/trackData/repeatModeler/${asmId}-families.fa" ]; then
+   rm -f "$buildDir/${asmId}.rmsk.customLib.fa.gz"
    cp -p "$buildDir/trackData/repeatModeler/${asmId}-families.fa" "$buildDir/${asmId}.rmsk.customLib.fa"
    gzip "$buildDir/${asmId}.rmsk.customLib.fa"
 fi
 
 if [ "${newRmsk}" -gt 0 ]; then
   rm -f $buildDir/bbi/${asmId}.rmsk.align.bb
   rm -f $buildDir/bbi/${asmId}.rmsk.bb
   rm -f $buildDir/${asmId}.fa.align.tsv.gz
   rm -f $buildDir/${asmId}.fa.join.tsv.gz
   if [ -s "$buildDir/bbi/${asmId}.rmsk.align.bb" ]; then
     ln -s ../trackData/repeatMasker/${asmId}.rmsk.align.bb $buildDir/bbi/${asmId}.rmsk.align.bb
     ln -s trackData/repeatMasker/${asmId}.fa.align.tsv.gz $buildDir/${asmId}.fa.align.tsv.gz
   fi
   ln -s ../trackData/repeatMasker/${asmId}.rmsk.bb $buildDir/bbi/${asmId}.rmsk.bb
   ln -s trackData/repeatMasker/${asmId}.sorted.fa.join.tsv.gz $buildDir/${asmId}.fa.join.tsv.gz