f5bc011a1d5dd3daa3211c93eead19e8c7f50ce3 braney Thu Mar 16 16:53:32 2023 -0700 polishing up squishyPack for release diff --git src/hg/makeDb/trackDb/human/hg38/knownGene.alpha.ra src/hg/makeDb/trackDb/human/hg38/knownGene.alpha.ra new file mode 100644 index 0000000..f8a0b47 --- /dev/null +++ src/hg/makeDb/trackDb/human/hg38/knownGene.alpha.ra @@ -0,0 +1,56 @@ +track knownGene +table knownGene +shortLabel GENCODE V43 +longLabel GENCODE V43 +priority 1 +visibility pack +type bigGenePred knownGenePep knownGeneMrna +bigDataUrl /gbdb/hg38/gencode/gencodeV43.bb +baseColorDefault genomicCodons +group genes +isGencode3 on +directUrl /cgi-bin/hgGene?hgg_gene=%s&hgg_chrom=%s&hgg_start=%d&hgg_end=%d&hgg_type=%s&db=%s +labelFields geneName,name,geneName2,name2 +defaultLabelFields geneName +itemRgb on +#externalDb knownGeneV43 +maxItems 50000 +html knownGeneV43 +searchIndex name +idXref kgAlias kgID alias +intronGap 12 +defaultLinkedTables kgXref +pennantIcon Updated red ../goldenPath/newsarch.html#022423 "Updated Feb. 24, 2023" +squishyPackPoint 2 +squishyPackField rank + +searchName knownGeneAcc +searchTable knownGene +searchMethod exact +searchType knownGene +shortCircuit 1 +semiShortCircuit 1 +termRegex ENST[0-9.]+ +searchPriority 9 + +track knownGeneOld12 +shortLabel Old UCSC Genes +longLabel Previous Version of UCSC Genes +group genes +visibility hide +color 82,82,160 +type genePred +hgsid on +oldToNew kg12ToKg13 +baseColorUseCds given +baseColorDefault genomicCodons + +searchName knownGeneFast +searchTable knownGene +searchType knownGeneFast +shortCircuit 1 +searchPriority 1001 +searchTrix /gbdb/hg38/knownGeneFastV43.ix +searchTrixContext on +doPage 1 +