d81de2e463562bf4591506561b16594173fb76b9
braney
  Tue Mar 14 14:18:57 2023 -0700
remove duplicates in RTS sessions

diff --git src/hg/utils/rts/hg38/Non_Coding_SNVs_hg38 src/hg/utils/rts/hg38/Non_Coding_SNVs_hg38
index 133087c..1039b89 100644
--- src/hg/utils/rts/hg38/Non_Coding_SNVs_hg38
+++ src/hg/utils/rts/hg38/Non_Coding_SNVs_hg38
@@ -1,353 +1,351 @@
 European=Server%3C%2Fli%3E
 _=1646762307890
 affyGnf1h=pack
 affyU133=pack
 affyU95=pack
 altSeqLiftOverPsl=hide
 augustusGene=pack
 bismap=full
 bloodHaoCellType=pack
 brainDevRegionsTissueCellType=hide
 c=chrX
 cadd=full
 caddA_imgOrd=17
 caddC_imgOrd=18
 caddDel=pack
 caddDel_imgOrd=21
 caddG_imgOrd=19
 caddIns=pack
 caddIns_imgOrd=22
 caddSuper=show
 caddT_imgOrd=20
 cartVersion=2
 centerLabels=1
 clade=mammal
 clinGenGeneDisease_imgOrd=9
 clinGenHaplo_imgOrd=7
 clinGenTriplo_imgOrd=8
 clinvar=pack
 clinvarCnv.doMergeItems=1
 clinvarCnv_sel=0
 clinvarMain_imgOrd=11
 clinvarMain_sel=0
 clinvarSubLolly_imgOrd=10
 colonWangCellType=pack
 cons100way=full
 cons100wayViewalign.showCfg=off
 cons100wayViewalign=hide
 cons100wayViewelements.showCfg=off
 cons100wayViewelements=dense
 cons100wayViewphastcons.showCfg=off
 cons100wayViewphastcons=full
 cons100wayViewphyloP.showCfg=off
 cortexVelmeshevCellType=pack
 cpgIslandExt=pack
 crispr10KRanges=hide
 crispr10KTargets=hide
 crisprEnsembl=hide
 crisprKmers=hide
 crisprRanges=hide
 crisprTargets=hide
 crossMatchUnique=hide
 cytoBandIdeo=dense
 db=hg38
 dbSnp153=dense
 dbSnp153BadCoords_sel=%2D2
 dbSnp153Common_imgOrd=23
 dbSnp153Common_sel=0
 dbSnp153Composite=full
 dbSnp153ViewErrs=hide
 dbSnp153ViewVariants.showCfg=on
 dbSnp153ViewVariants=dense
 dbSnp153_imgOrd=12
 dbSnp153_sel=1
 dbVar_common=pack
 dbVar_conflict=pack
 defaultsSet=on
 dinkL=2.0
 dinkR=2.0
 displaySubtracks=all
 enableHighlightingDialog=1
 encodeCcreCombined.alwaysZero=OFF
 encodeCcreCombined.autoScale=auto%2Dscale+to+data+view
 encodeCcreCombined.doWiggle=0
 encodeCcreCombined.filterBy.ucscLabel=All
 encodeCcreCombined.heightPer=128
 encodeCcreCombined.horizGrid=OFF
 encodeCcreCombined.label.accessionLabel=1
 encodeCcreCombined.label.encodeLabel=0
 encodeCcreCombined.label.ucscLabel=1
 encodeCcreCombined.lineBar=bar
 encodeCcreCombined.negateValues=0
 encodeCcreCombined.smoothingWindow=OFF
 encodeCcreCombined.transformFunc=NONE
 encodeCcreCombined.windowingFunction=maximum
 encodeCcreCombined.yLineMark=0
 encodeCcreCombined.yLineOnOff=OFF
 encodeCcreCombined=pack
 encodeCcreCombined_imgOrd=26
 exonNumbers=1
 expOrder_caddSuper=caddG+caddC+caddT+caddA+
 expOrder_cons100way=phastCons100way+phyloP100way+
 expOrder_revel=revelC+revelG+revelA+revelT+
 expOrder_wgEncodeReg=wgEncodeRegDnaseWig+wgEncodeRegMarkH3k4me1+wgEncodeRegMarkH3k4me3+wgEncodeRegMarkH3k27ac+
 fetalGeneAtlasCellType=pack
 fixSeqLiftOverPsl=hide
 g=cons100way
-g=cons100way
 geneHancer=pack
 geneHancerClusteredInteractionsDoubleElite_imgOrd=27
 geneHancerGenesDoubleElite_imgOrd=24
 geneHancerInteractionsDoubleElite_imgOrd=25
 geneHancerInteractionsDoubleElite_sel=1
 geneHancerRegElementsDoubleElite_imgOrd=23
 geneReviews=pack
 geneReviews_imgOrd=6
 ghClusteredInteraction.showCfg=off
 ghGeneHancer.showCfg=off
 ghInteraction.heightPer=50
 ghInteraction.showCfg=off
 ghInteraction=pack
 gnomadGenomesVariantsV3_1_1.alwaysZero=OFF
 gnomadGenomesVariantsV3_1_1.autoScale=auto%2Dscale+to+data+view
 gnomadGenomesVariantsV3_1_1.doWiggle=0
 gnomadGenomesVariantsV3_1_1.filter.AF=0
 gnomadGenomesVariantsV3_1_1.filterBy.FILTER=PASS
 gnomadGenomesVariantsV3_1_1.filterBy.annot=All
 gnomadGenomesVariantsV3_1_1.filterBy.variation_type=All
 gnomadGenomesVariantsV3_1_1.filterType.FILTER=multipleListAnd
 gnomadGenomesVariantsV3_1_1.filterType.variation_type=multipleListOr
 gnomadGenomesVariantsV3_1_1.heightPer=128
 gnomadGenomesVariantsV3_1_1.horizGrid=OFF
 gnomadGenomesVariantsV3_1_1.label._displayName=1
 gnomadGenomesVariantsV3_1_1.label.rsId=0
 gnomadGenomesVariantsV3_1_1.lineBar=bar
 gnomadGenomesVariantsV3_1_1.negateValues=0
 gnomadGenomesVariantsV3_1_1.section_superDescription_close=1
 gnomadGenomesVariantsV3_1_1.section_superMembers_close=0
 gnomadGenomesVariantsV3_1_1.smoothingWindow=OFF
 gnomadGenomesVariantsV3_1_1.transformFunc=NONE
 gnomadGenomesVariantsV3_1_1.windowingFunction=maximum
 gnomadGenomesVariantsV3_1_1.yLineMark=0
 gnomadGenomesVariantsV3_1_1.yLineOnOff=OFF
 gnomadGenomesVariantsV3_1_1=dense
 gnomadGenomesVariantsV3_1_1_imgOrd=13
 gnomadVariants=show
 goButton=go
 gtexEqtlHighConf.dashes=1
 gtexEqtlHighConf.draw=curve
 gtexEqtlHighConf.endsVisible=any
 gtexEqtlHighConf.filter.cpp=0
 gtexEqtlHighConf.filterBy.tissue=Whole_Blood
 gtexEqtlHighConf.filterText.geneName=%2A
 gtexEqtlHighConf.filterType.geneName=wildcard
 gtexEqtlHighConf.heightPer=200
 gtexEqtlHighConf=pack
 gtexEqtlHighConf_imgOrd=43
 gtexGeneV8=hide
 gtexGeneV8_imgOrd=35
 guidelines=1
 heartAtlasCellTypes=pack
 hgFind.matches=ENST00000678073.1%2C
 hgPS_DataTableState=%257B%2522time%2522%253A1602591005253%252C%2522start%2522%253A0%252C%2522length%2522%253A10%252C%2522order%2522%253A%255B%255B2%252C%2522desc%2522%255D%255D%252C%2522search%2522%253A%257B%2522search%2522%253A%2522%2522%252C%2522smart%2522%253Atrue%252C%2522regex%2522%253Afalse%252C%2522caseInsensitive%2522%253Atrue%257D%252C%2522columns%2522%253A%255B%257B%2522visible%2522%253Atrue%252C%2522search%2522%253A%257B%2522search%2522%253A%2522%2522%252C%2522smart%2522%253Atrue%252C%2522regex%2522%253Afalse%252C%2522caseInsensitive%2522%253Atrue%257D%257D%252C%257B%2522visible%2522%253Atrue%252C%2522search%2522%253A%257B%2522search%2522%253A%2522%2522%252C%2522smart%2522%253Atrue%252C%2522regex%2522%253Afalse%252C%2522caseInsensitive%2522%253Atrue%257D%257D%252C%257B%2522visible%2522%253Afalse%252C%2522search%2522%253A%257B%2522search%2522%253A%2522%2522%252C%2522smart%2522%253Atrue%252C%2522regex%2522%253Afalse%252C%2522caseInsensitive%2522%253Atrue%257D%257D%252C%257B%2522visible%2522%253Afalse%252C%2522search%2522%253A%257B%2522search%2522%253A%2522%2522%252C%2522smart%2522%253Atrue%252C%2522regex%2522%253Afalse%252C%2522caseInsensitive%2522%253Atrue%257D%257D%255D%257D
-hgPS_DataTableState=%257B%2522time%2522%253A1602591005253%252C%2522start%2522%253A0%252C%2522length%2522%253A10%252C%2522order%2522%253A%255B%255B2%252C%2522desc%2522%255D%255D%252C%2522search%2522%253A%257B%2522search%2522%253A%2522%2522%252C%2522smart%2522%253Atrue%252C%2522regex%2522%253Afalse%252C%2522caseInsensitive%2522%253Atrue%257D%252C%2522columns%2522%253A%255B%257B%2522visible%2522%253Atrue%252C%2522search%2522%253A%257B%2522search%2522%253A%2522%2522%252C%2522smart%2522%253Atrue%252C%2522regex%2522%253Afalse%252C%2522caseInsensitive%2522%253Atrue%257D%257D%252C%257B%2522visible%2522%253Atrue%252C%2522search%2522%253A%257B%2522search%2522%253A%2522%2522%252C%2522smart%2522%253Atrue%252C%2522regex%2522%253Afalse%252C%2522caseInsensitive%2522%253Atrue%257D%257D%252C%257B%2522visible%2522%253Afalse%252C%2522search%2522%253A%257B%2522search%2522%253A%2522%2522%252C%2522smart%2522%253Atrue%252C%2522regex%2522%253Afalse%252C%2522caseInsensitive%2522%253Atrue%257D%257D%252C%257B%2522visible%2522%253Afalse%252C%2522search%2522%253A%257B%2522search%2522%253A%2522%2522%252C%2522smart%2522%253Atrue%252C%2522regex%2522%253Afalse%252C%2522caseInsensitive%2522%253Atrue%257D%257D%255D%257D
 hgS_DataTableState=%257B%2522time%2522%253A1647463522856%252C%2522start%2522%253A0%252C%2522length%2522%253A10%252C%2522order%2522%253A%255B2%252C%2522desc%2522%255D%252C%2522search%2522%253A%257B%2522search%2522%253A%2522%2522%252C%2522smart%2522%253Atrue%252C%2522regex%2522%253Afalse%252C%2522caseInsensitive%2522%253Atrue%257D%252C%2522columns%2522%253A%255B%257B%2522visible%2522%253Atrue%252C%2522search%2522%253A%257B%2522search%2522%253A%2522%2522%252C%2522smart%2522%253Atrue%252C%2522regex%2522%253Afalse%252C%2522caseInsensitive%2522%253Atrue%257D%257D%252C%257B%2522visible%2522%253Atrue%252C%2522search%2522%253A%257B%2522search%2522%253A%2522%2522%252C%2522smart%2522%253Atrue%252C%2522regex%2522%253Afalse%252C%2522caseInsensitive%2522%253Atrue%257D%257D%252C%257B%2522visible%2522%253Atrue%252C%2522search%2522%253A%257B%2522search%2522%253A%2522%2522%252C%2522smart%2522%253Atrue%252C%2522regex%2522%253Afalse%252C%2522caseInsensitive%2522%253Atrue%257D%257D%252C%257B%2522visible%2522%253Atrue%252C%2522search%2522%253A%257B%2522search%2522%253A%2522%2522%252C%2522smart%2522%253Atrue%252C%2522regex%2522%253Afalse%252C%2522caseInsensitive%2522%253Atrue%257D%257D%252C%257B%2522visible%2522%253Atrue%252C%2522search%2522%253A%257B%2522search%2522%253A%2522%2522%252C%2522smart%2522%253Atrue%252C%2522regex%2522%253Afalse%252C%2522caseInsensitive%2522%253Atrue%257D%257D%252C%257B%2522visible%2522%253Atrue%252C%2522search%2522%253A%257B%2522search%2522%253A%2522%2522%252C%2522smart%2522%253Atrue%252C%2522regex%2522%253Afalse%252C%2522caseInsensitive%2522%253Atrue%257D%257D%252C%257B%2522visible%2522%253Atrue%252C%2522search%2522%253A%257B%2522search%2522%253A%2522%2522%252C%2522smart%2522%253Atrue%252C%2522regex%2522%253Afalse%252C%2522caseInsensitive%2522%253Atrue%257D%257D%252C%257B%2522visible%2522%253Atrue%252C%2522search%2522%253A%257B%2522search%2522%253A%2522%2522%252C%2522smart%2522%253Atrue%252C%2522regex%2522%253Afalse%252C%2522caseInsensitive%2522%253Atrue%257D%257D%252C%257B%2522visible%2522%253Atrue%252C%2522search%2522%253A%257B%2522search%2522%253A%2522%2522%252C%2522smart%2522%253Atrue%252C%2522regex%2522%253Afalse%252C%2522caseInsensitive%2522%253Atrue%257D%257D%255D%257D
 hgS_loadUrlName=
 hgS_newSessionName=Non_Coding_SNVs_hg38
 hgS_newSessionShare=1
 hgS_otherUserName=
 hgS_otherUserSessionName=
 hgS_saveLocalFileCompress=none
 hgS_saveLocalFileName=
 hgmd=pack
 hgmd_imgOrd=8
 hgt.labelWidth=20
 hgtgroup_compGeno_close=0
 hgtgroup_covid_close=1
 hgtgroup_expression_close=1
 hgtgroup_genes_close=0
 hgtgroup_map_close=1
 hgtgroup_phenDis_close=0
 hgtgroup_regulation_close=0
 hgtgroup_rep_close=0
 hgtgroup_rna_close=1
 hgtgroup_singleCell_close=1
 hgtgroup_varRep_close=0
 highlight=hg38%23chr11%235227002%235227002%23d8f7d7
 hippocampusAyhanCellType=hide
 hmmerUnique=hide
 ideogram=1
 ileumWangCellType=pack
 jaspar2022_imgOrd=31
 jaspar=dense
 jsh_pageVertPos=0
 kidneyStewartCellType=pack
 knownGene=hide
 knownGeneV36=hide
 knownGeneV38=hide
 knownGene_imgOrd=38
 l=15557038
 lastPosition=chrX%3A15557039%2D15607236
 lastVirtModeExtraState=
 lastVirtModeType=default
 leftLabels=1
 lincRNAsAllCellTypeTopView=dense
 lincRNAsTranscripts=pack
 liverMacParlandCellType=pack
 lovdComp=pack
 lovdLong.doMergeItems=1
 lovdLong_imgOrd=29
 lovdLong_sel=0
 lovdShort_imgOrd=9
 lrgTranscriptAli=pack
 lrgTranscriptAli_imgOrd=3
 lungTravaglini2020CellType10x=pack
 mane=pack
 mane_imgOrd=4
 mastermind=dense
 mastermind_imgOrd=11
 multiz100way_imgOrd=26
 multiz100way_sel=%2D1
 muscleDeMicheliCellType=pack
 ncbiAltMappingsChain=hide
 ncbiAltMappingsMaf=hide
 ncbiRefSeqCurated_imgOrd=1
 ncbiRefSeqHgmd_imgOrd=2
 ncbiRefSeqHgmd_sel=1
 nextExonArrows=1
 nextItemArrows=0
 o=15564569
 oldPosition=chrX%3A15557039%2D15607236
 omimAvSnp=hide
 omimGene2.label.class1=1
 omimGene2.label.class2=1
 omimGene2.label.class3=1
 omimGene2.label.class4=1
 omimGene2.label.gene=1
 omimGene2.label.omimId=1
 omimGene2.label.others=1
 omimGene2=pack
 omimGene2_imgOrd=5
 oreganno.filter.haplo=1
 oreganno.filter.mirna=1
 oreganno.filter.poly=1
 oreganno.filter.reg=1
 oreganno.filter.tfbs=1
 oreganno_imgOrd=26
 org=Human
 orphadata=pack
 orphadata_imgOrd=7
 pancreasBaronCellType=pack
 phastCons100way_imgOrd=15
 phastCons100way_sel=1
 phastConsElements100way_imgOrd=16
 phastConsElements100way_sel=1
 phyloP100way_imgOrd=14
 phyloP100way_sel=1
 pix=1779
 placentaVentoTormoCellType10x=pack
 placentaVentoTormoLocation10x=pack
 placentaVentoTormoLocationSs2=pack
 position.hg38=lastVirtModeType%3Ddefault%26lastVirtModeExtraState%3D%26virtModeType%3Ddefault%26virtMode%3D0%26nonVirtPosition%3D%26position%3DchrX%253A15557039%252D15607236
 position=chrX%3A15557039%2D15607236
 quakeGeneExpr=hide
 r=15607236
 rectumWangCellType=pack
 redirect=manual
 refSeqComposite.label.gene=1
 refSeqComposite=pack
 revelA_imgOrd=34
 revelC_imgOrd=35
 revelG_imgOrd=36
 revelT_imgOrd=37
 rmsk=hide
 rmskBlastn=hide
 rmskCM=hide
 rmskGenbank=hide
 rmskHmmer2020=hide
 rmskHmmer=hide
 rmsk_imgOrd=25
 ruler=dense
 sessionTable_length=10
 simOrder_caddSuper=caddA+caddG+caddC+caddT+
 simOrder_cons100way=phastCons100way+phyloP100way+
 simOrder_revel=revelG+revelA+revelC+revelT+
 simOrder_wgEncodeReg=wgEncodeRegDnaseWig+wgEncodeRegMarkH3k27ac+wgEncodeRegMarkH3k4me1+wgEncodeRegMarkH3k4me3+
 skinSoleBoldoCellType=pack
 snp151Common=pack
 spMut.alwaysZero=OFF
 spMut.autoScale=auto%2Dscale+to+data+view
 spMut.doWiggle=0
 spMut.heightPer=128
 spMut.horizGrid=OFF
 spMut.lineBar=bar
 spMut.negateValues=0
 spMut.smoothingWindow=OFF
 spMut.transformFunc=NONE
 spMut.windowingFunction=maximum
 spMut.yLineMark=0
 spMut.yLineOnOff=OFF
 spMut_imgOrd=15
 t=15564570
 tRNAs=pack
 tabulaSapiensTissueCellType=hide
 tcgaGeneExpr=pack
 tcgaTranscExpr=pack
 textFont=Helvetica
 textSize=12
 textStyle=Normal
 tgpTrios=hide
 toothKrivanekTissueCellType=hide
 topSubmit=submit
 trackControlsOnMain=1
 trackHubs=
 transMapEnsemblV4=hide
 transMapEnsemblV5=pack
 transMapEnsemblV6=hide
 transMapRefSeqV4=hide
 transMapRefSeqV5=pack
 transMapRefSeqV6=hide
 transMapRnaV4=hide
 umap=full
 unipAliSwissprot_sel=0
 unipChain_sel=0
 unipDisulfBond_imgOrd=24
 unipDomain_imgOrd=23
 unipFullSeq_sel=0
 unipInterest_imgOrd=19
 unipLocCytopl_imgOrd=22
 unipLocExtra_imgOrd=20
 unipLocSignal_imgOrd=18
 unipLocTransMemb_imgOrd=21
 unipModif_imgOrd=25
 unipMut_sel=0
 unipOther_sel=0
 unipRepeat_sel=0
 unipStruct_sel=0
 varsInPubs=show
 virtMode=0
 virtModeType=default
 wgEncodeGencodeV38=pack
 wgEncodeGencodeV39=hide
 wgEncodeReg=hide
 wgEncodeRegDnase=pack
 wgEncodeRegDnaseClustered=pack
 wgEncodeRegDnaseClustered_imgOrd=32
 wgEncodeRegDnaseUwGm12878Peak_imgOrd=40
 wgEncodeRegDnaseUwH7hescPeak_imgOrd=41
 wgEncodeRegDnaseUwHelas3Peak_imgOrd=42
 wgEncodeRegDnaseUwHepg2Peak_imgOrd=39
 wgEncodeRegDnaseUwHsmmPeak_imgOrd=36
 wgEncodeRegDnaseUwHuvecPeak_imgOrd=37
 wgEncodeRegDnaseUwK562Peak_imgOrd=34
 wgEncodeRegDnaseUwNhekPeak_imgOrd=38
 wgEncodeRegDnaseUwNhlfPeak_imgOrd=35
 wgEncodeRegDnaseWig=pack
 wgEncodeRegDnaseWig_imgOrd=33
 wgEncodeRegMarkH3k27ac=pack
 wgEncodeRegMarkH3k27ac_imgOrd=29
 wgEncodeRegMarkH3k4me1=pack
 wgEncodeRegMarkH3k4me1_imgOrd=28
 wgEncodeRegMarkH3k4me3=pack
 wgEncodeRegMarkH3k4me3_imgOrd=30
 wgRna=pack