d81de2e463562bf4591506561b16594173fb76b9 braney Tue Mar 14 14:18:57 2023 -0700 remove duplicates in RTS sessions diff --git src/hg/utils/rts/hg38/Non_Coding_SNVs_hg38 src/hg/utils/rts/hg38/Non_Coding_SNVs_hg38 index 133087c..1039b89 100644 --- src/hg/utils/rts/hg38/Non_Coding_SNVs_hg38 +++ src/hg/utils/rts/hg38/Non_Coding_SNVs_hg38 @@ -1,353 +1,351 @@ European=Server%3C%2Fli%3E _=1646762307890 affyGnf1h=pack affyU133=pack affyU95=pack altSeqLiftOverPsl=hide augustusGene=pack bismap=full bloodHaoCellType=pack brainDevRegionsTissueCellType=hide c=chrX cadd=full caddA_imgOrd=17 caddC_imgOrd=18 caddDel=pack caddDel_imgOrd=21 caddG_imgOrd=19 caddIns=pack caddIns_imgOrd=22 caddSuper=show caddT_imgOrd=20 cartVersion=2 centerLabels=1 clade=mammal clinGenGeneDisease_imgOrd=9 clinGenHaplo_imgOrd=7 clinGenTriplo_imgOrd=8 clinvar=pack clinvarCnv.doMergeItems=1 clinvarCnv_sel=0 clinvarMain_imgOrd=11 clinvarMain_sel=0 clinvarSubLolly_imgOrd=10 colonWangCellType=pack cons100way=full cons100wayViewalign.showCfg=off cons100wayViewalign=hide cons100wayViewelements.showCfg=off cons100wayViewelements=dense cons100wayViewphastcons.showCfg=off cons100wayViewphastcons=full cons100wayViewphyloP.showCfg=off cortexVelmeshevCellType=pack cpgIslandExt=pack crispr10KRanges=hide crispr10KTargets=hide crisprEnsembl=hide crisprKmers=hide crisprRanges=hide crisprTargets=hide crossMatchUnique=hide cytoBandIdeo=dense db=hg38 dbSnp153=dense dbSnp153BadCoords_sel=%2D2 dbSnp153Common_imgOrd=23 dbSnp153Common_sel=0 dbSnp153Composite=full dbSnp153ViewErrs=hide dbSnp153ViewVariants.showCfg=on dbSnp153ViewVariants=dense dbSnp153_imgOrd=12 dbSnp153_sel=1 dbVar_common=pack dbVar_conflict=pack defaultsSet=on dinkL=2.0 dinkR=2.0 displaySubtracks=all enableHighlightingDialog=1 encodeCcreCombined.alwaysZero=OFF encodeCcreCombined.autoScale=auto%2Dscale+to+data+view encodeCcreCombined.doWiggle=0 encodeCcreCombined.filterBy.ucscLabel=All encodeCcreCombined.heightPer=128 encodeCcreCombined.horizGrid=OFF encodeCcreCombined.label.accessionLabel=1 encodeCcreCombined.label.encodeLabel=0 encodeCcreCombined.label.ucscLabel=1 encodeCcreCombined.lineBar=bar encodeCcreCombined.negateValues=0 encodeCcreCombined.smoothingWindow=OFF encodeCcreCombined.transformFunc=NONE encodeCcreCombined.windowingFunction=maximum encodeCcreCombined.yLineMark=0 encodeCcreCombined.yLineOnOff=OFF encodeCcreCombined=pack encodeCcreCombined_imgOrd=26 exonNumbers=1 expOrder_caddSuper=caddG+caddC+caddT+caddA+ expOrder_cons100way=phastCons100way+phyloP100way+ expOrder_revel=revelC+revelG+revelA+revelT+ expOrder_wgEncodeReg=wgEncodeRegDnaseWig+wgEncodeRegMarkH3k4me1+wgEncodeRegMarkH3k4me3+wgEncodeRegMarkH3k27ac+ fetalGeneAtlasCellType=pack fixSeqLiftOverPsl=hide g=cons100way -g=cons100way geneHancer=pack geneHancerClusteredInteractionsDoubleElite_imgOrd=27 geneHancerGenesDoubleElite_imgOrd=24 geneHancerInteractionsDoubleElite_imgOrd=25 geneHancerInteractionsDoubleElite_sel=1 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hgS_loadUrlName= hgS_newSessionName=Non_Coding_SNVs_hg38 hgS_newSessionShare=1 hgS_otherUserName= hgS_otherUserSessionName= hgS_saveLocalFileCompress=none hgS_saveLocalFileName= hgmd=pack hgmd_imgOrd=8 hgt.labelWidth=20 hgtgroup_compGeno_close=0 hgtgroup_covid_close=1 hgtgroup_expression_close=1 hgtgroup_genes_close=0 hgtgroup_map_close=1 hgtgroup_phenDis_close=0 hgtgroup_regulation_close=0 hgtgroup_rep_close=0 hgtgroup_rna_close=1 hgtgroup_singleCell_close=1 hgtgroup_varRep_close=0 highlight=hg38%23chr11%235227002%235227002%23d8f7d7 hippocampusAyhanCellType=hide hmmerUnique=hide ideogram=1 ileumWangCellType=pack jaspar2022_imgOrd=31 jaspar=dense jsh_pageVertPos=0 kidneyStewartCellType=pack knownGene=hide knownGeneV36=hide knownGeneV38=hide knownGene_imgOrd=38 l=15557038 lastPosition=chrX%3A15557039%2D15607236 lastVirtModeExtraState= lastVirtModeType=default leftLabels=1 lincRNAsAllCellTypeTopView=dense lincRNAsTranscripts=pack liverMacParlandCellType=pack lovdComp=pack lovdLong.doMergeItems=1 lovdLong_imgOrd=29 lovdLong_sel=0 lovdShort_imgOrd=9 lrgTranscriptAli=pack lrgTranscriptAli_imgOrd=3 lungTravaglini2020CellType10x=pack mane=pack mane_imgOrd=4 mastermind=dense mastermind_imgOrd=11 multiz100way_imgOrd=26 multiz100way_sel=%2D1 muscleDeMicheliCellType=pack ncbiAltMappingsChain=hide ncbiAltMappingsMaf=hide ncbiRefSeqCurated_imgOrd=1 ncbiRefSeqHgmd_imgOrd=2 ncbiRefSeqHgmd_sel=1 nextExonArrows=1 nextItemArrows=0 o=15564569 oldPosition=chrX%3A15557039%2D15607236 omimAvSnp=hide omimGene2.label.class1=1 omimGene2.label.class2=1 omimGene2.label.class3=1 omimGene2.label.class4=1 omimGene2.label.gene=1 omimGene2.label.omimId=1 omimGene2.label.others=1 omimGene2=pack omimGene2_imgOrd=5 oreganno.filter.haplo=1 oreganno.filter.mirna=1 oreganno.filter.poly=1 oreganno.filter.reg=1 oreganno.filter.tfbs=1 oreganno_imgOrd=26 org=Human orphadata=pack orphadata_imgOrd=7 pancreasBaronCellType=pack phastCons100way_imgOrd=15 phastCons100way_sel=1 phastConsElements100way_imgOrd=16 phastConsElements100way_sel=1 phyloP100way_imgOrd=14 phyloP100way_sel=1 pix=1779 placentaVentoTormoCellType10x=pack placentaVentoTormoLocation10x=pack placentaVentoTormoLocationSs2=pack position.hg38=lastVirtModeType%3Ddefault%26lastVirtModeExtraState%3D%26virtModeType%3Ddefault%26virtMode%3D0%26nonVirtPosition%3D%26position%3DchrX%253A15557039%252D15607236 position=chrX%3A15557039%2D15607236 quakeGeneExpr=hide r=15607236 rectumWangCellType=pack redirect=manual refSeqComposite.label.gene=1 refSeqComposite=pack revelA_imgOrd=34 revelC_imgOrd=35 revelG_imgOrd=36 revelT_imgOrd=37 rmsk=hide rmskBlastn=hide rmskCM=hide rmskGenbank=hide rmskHmmer2020=hide rmskHmmer=hide rmsk_imgOrd=25 ruler=dense sessionTable_length=10 simOrder_caddSuper=caddA+caddG+caddC+caddT+ simOrder_cons100way=phastCons100way+phyloP100way+ simOrder_revel=revelG+revelA+revelC+revelT+ simOrder_wgEncodeReg=wgEncodeRegDnaseWig+wgEncodeRegMarkH3k27ac+wgEncodeRegMarkH3k4me1+wgEncodeRegMarkH3k4me3+ skinSoleBoldoCellType=pack snp151Common=pack spMut.alwaysZero=OFF spMut.autoScale=auto%2Dscale+to+data+view spMut.doWiggle=0 spMut.heightPer=128 spMut.horizGrid=OFF spMut.lineBar=bar spMut.negateValues=0 spMut.smoothingWindow=OFF spMut.transformFunc=NONE spMut.windowingFunction=maximum spMut.yLineMark=0 spMut.yLineOnOff=OFF spMut_imgOrd=15 t=15564570 tRNAs=pack tabulaSapiensTissueCellType=hide tcgaGeneExpr=pack tcgaTranscExpr=pack textFont=Helvetica textSize=12 textStyle=Normal tgpTrios=hide toothKrivanekTissueCellType=hide topSubmit=submit trackControlsOnMain=1 trackHubs= transMapEnsemblV4=hide transMapEnsemblV5=pack transMapEnsemblV6=hide transMapRefSeqV4=hide transMapRefSeqV5=pack transMapRefSeqV6=hide transMapRnaV4=hide umap=full unipAliSwissprot_sel=0 unipChain_sel=0 unipDisulfBond_imgOrd=24 unipDomain_imgOrd=23 unipFullSeq_sel=0 unipInterest_imgOrd=19 unipLocCytopl_imgOrd=22 unipLocExtra_imgOrd=20 unipLocSignal_imgOrd=18 unipLocTransMemb_imgOrd=21 unipModif_imgOrd=25 unipMut_sel=0 unipOther_sel=0 unipRepeat_sel=0 unipStruct_sel=0 varsInPubs=show virtMode=0 virtModeType=default wgEncodeGencodeV38=pack wgEncodeGencodeV39=hide wgEncodeReg=hide wgEncodeRegDnase=pack wgEncodeRegDnaseClustered=pack wgEncodeRegDnaseClustered_imgOrd=32 wgEncodeRegDnaseUwGm12878Peak_imgOrd=40 wgEncodeRegDnaseUwH7hescPeak_imgOrd=41 wgEncodeRegDnaseUwHelas3Peak_imgOrd=42 wgEncodeRegDnaseUwHepg2Peak_imgOrd=39 wgEncodeRegDnaseUwHsmmPeak_imgOrd=36 wgEncodeRegDnaseUwHuvecPeak_imgOrd=37 wgEncodeRegDnaseUwK562Peak_imgOrd=34 wgEncodeRegDnaseUwNhekPeak_imgOrd=38 wgEncodeRegDnaseUwNhlfPeak_imgOrd=35 wgEncodeRegDnaseWig=pack wgEncodeRegDnaseWig_imgOrd=33 wgEncodeRegMarkH3k27ac=pack wgEncodeRegMarkH3k27ac_imgOrd=29 wgEncodeRegMarkH3k4me1=pack wgEncodeRegMarkH3k4me1_imgOrd=28 wgEncodeRegMarkH3k4me3=pack wgEncodeRegMarkH3k4me3_imgOrd=30 wgRna=pack