90006ce50a15349235c0defdc272526fe1b48aa1 hiram Sat Mar 18 09:13:46 2023 -0700 adding three per user request refs #29545 diff --git src/hg/makeDb/doc/asmHubs/master.run.list src/hg/makeDb/doc/asmHubs/master.run.list index fa6c24d..ec55a86 100644 --- src/hg/makeDb/doc/asmHubs/master.run.list +++ src/hg/makeDb/doc/asmHubs/master.run.list @@ -1,16 +1,15 @@ - ./runBuild GCA_000001905.1_Loxafr3.0 mammals Loxodonta_africana ./runBuild GCA_000002305.1_EquCab2.0 mammals Equus_caballus ./runBuild GCA_000002595.3_Chlamydomonas_reinhardtii_v5.5 plants Chlamydomonas_reinhardtii ./runBuild GCA_000002725.2_ASM272v2 invertebrate Leishmania_major_strain_Friedlin ./runBuild GCA_000002875.2_ASM287v2 invertebrate Leishmania_infantum_JPCM5 ./runBuild GCA_000003205.6_Btau_5.0.1 mammals Bos_taurus ./runBuild GCA_000003525.2_BD_ER3_V1 fungi Blastomyces_dermatitidis_ER-3 ./runBuild GCA_000003625.1_OryCun2.0 mammals Oryctolagus_cuniculus ./runBuild GCA_000003855.2_BD_SLH14081_V1 fungi Blastomyces_gilchristii_SLH14081 ./runBuild GCA_000006255.1_Postia_placenta_V1.0 fungi Postia_placenta_Mad-698-R ./runBuild GCA_000009105.1_ASM910v1 bacteria Neisseria_meningitidis_Z2491 ./runBuild GCA_000009145.1_ASM914v1 bacteria Nitrosomonas_europaea_ATCC_19718 ./runBuild GCA_000011325.1_ASM1132v1 bacteria Corynebacterium_glutamicum_ATCC_13032 ./runBuild GCA_000015885.1_ASM1588v1 bacteria Actinobacillus_pleuropneumoniae_serovar_5b_str._L20 ./runBuild GCA_000017965.1_ASM1796v1 bacteria Lysinibacillus_sphaericus_C3-41 @@ -51,30 +50,31 @@ ./runBuild GCA_000260255.1_OctDeg1.0 mammals Octodon_degus ./runBuild GCA_000264685.2_Panu_3.0 primates Papio_anubis ./runBuild GCA_000269785.2_AspOry3042 fungi Aspergillus_oryzae_3.042 ./runBuild GCA_000277735.2_ASM27773v2 bacteria Mycobacterium_tuberculosis_H37Rv ./runBuild GCA_000280705.1_JacJac1.0 mammals Jaculus_jaculus ./runBuild GCA_000283155.1_CerSimSim1.0 mammals Ceratotherium_simum_simum ./runBuild GCA_000292845.1_OchPri3.0 mammals Ochotona_princeps ./runBuild GCA_000296755.1_EriEur2.0 mammals Erinaceus_europaeus ./runBuild GCA_000297895.2_ASM29789v2 invertebrate Crassostrea_gigas ./runBuild GCA_000298735.2_Oar_v4.0 mammals Ovis_aries ./runBuild GCA_000300575.2_ASM30057v2 fungi Agaricus_bisporus ./runBuild GCA_000311805.2_CB1 mammals Camelus_ferus ./runBuild GCA_000313545.1_ASM31354v1 fungi Serendipita_indica_DSM_11827 ./runBuild GCA_000313985.1_EchTel2.0 mammals Echinops_telfairi ./runBuild GCA_000315645.2_PdigPd1_v1 fungi Penicillium_digitatum_Pd1 +./runBuild GCA_000332375.2_ASM33237v2 birds Amazona_vittata ./runBuild GCA_000338035.1_Glu37177_1.0 fungi Ganoderma_lucidum_BCRC_37177 ./runBuild GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6 invertebrate Leishmania_braziliensis ./runBuild GCA_000344655.2_Fompi3 fungi Fomitopsis_pinicola_FP-58527_SS1 ./runBuild GCA_000349665.1_MesAur1.0 mammals Mesocricetus_auratus ./runBuild GCA_000349705.1_LepWed1.0 mammals Leptonychotes_weddellii ./runBuild GCA_000364345.1_Macaca_fascicularis_5.0 primates Macaca_fascicularis ./runBuild GCA_000364385.3_ASM36438v3 bacteria Klebsiella_pneumoniae ./runBuild GCA_000365465.3_Ptep_3.0 invertebrate Parasteatoda_tepidariorum ./runBuild GCA_000383595.1_ASM38359v1 bacteria Streptomyces_bottropensis_ATCC_25435 ./runBuild GCA_000400835.1_PHO1.0 mammals Pantholops_hodgsonii ./runBuild GCA_000409795.2_Chlorocebus_sabeus_1.1 primates Chlorocebus_sabaeus ./runBuild GCA_000410855.1_Candida_lusitaniae_Genome_Assembly fungi Clavispora_lusitaniae_MTCC_1001 ./runBuild GCA_000416365.2_ASM41636v2 bacteria Mycobacterium_sp._VKM_Ac-1817D ./runBuild GCA_000420465.1_ASM42046v1 bacteria Desulfovibrio_desulfuricans_DSM_642 ./runBuild GCA_000442215.1_Lipotes_vexillifer_v1 mammals Lipotes_vexillifer @@ -581,30 +581,31 @@ ./runBuild GCA_016165845.1_Cannbio-2 plants Cannabis_sativa ./runBuild GCA_016413745.1_ASM1641374v1 bacteria Bacillus_mojavensis ./runBuild GCA_016413885.1_Elo_Vpla-B_alternate_1.0 plants Vanilla_planifolia ./runBuild GCA_016413895.1_Elo_Vpla-A_principal_1.0 plants Vanilla_planifolia ./runBuild GCA_016432865.1_AdamAnt mammals Antechinus_flavipes ./runBuild GCA_016647715.1_ASM1664771v1 birds Pavo_muticus ./runBuild GCA_016695395.2_mHomSap3.mat primates Homo_sapiens ./runBuild GCA_016700455.2_mHomSap3.pat primates Homo_sapiens ./runBuild GCA_016772295.1_ASM1677229v1 fungi Coprinopsis_cinerea_AmutBmut_pab1-1 ./runBuild GCA_016880875.1_bAcaChl1.alt birds Acanthisitta_chloris ./runBuild GCA_016904835.1_bAcaChl1.pri birds Acanthisitta_chloris ./runBuild GCA_017311355.1_CVASU_Gayal_001 mammals Bos_frontalis ./runBuild GCA_017312745.1_Gbim_1.0 invertebrate Gryllus_bimaculatus ./runBuild GCA_017562165.1_ASM1756216v1 invertebrate Ectropis_grisescens ./runBuild GCA_017639245.1_MMon_1.0 birds Myiopsitta_monachus +./runBuild GCA_017639355.1_Aaes_hic birds Amazona_aestiva ./runBuild GCA_017639475.1_bPluApr1.alt birds Pluvialis_apricaria ./runBuild GCA_017639485.1_bPluApr1.pri birds Pluvialis_apricaria ./runBuild GCA_017639555.1_bCicMag1.pri birds Ciconia_maguari ./runBuild GCA_017639645.1_bFalNau1.mat birds Falco_naumanni ./runBuild GCA_017639665.1_bCicMag1.alt birds Ciconia_maguari ./runBuild GCA_017639675.1_fAplTae1.pri fish Aplochiton_taeniatus ./runBuild GCA_017639685.1_fAplTae1.alt fish Aplochiton_taeniatus ./runBuild GCA_017639755.1_fMelBoe1.alt fish Melanotaenia_boesemani ./runBuild GCA_017976295.1_fToxJac2.alt fish Toxotes_jaculatrix ./runBuild GCA_017976305.1_bCucCan1.alt birds Cuculus_canorus ./runBuild GCA_017976315.1_fCheRos1.alt fish Chelmon_rostratus ./runBuild GCA_017976375.1_bCucCan1.pri birds Cuculus_canorus ./runBuild GCA_018104305.1_AalbF3 invertebrate Aedes_albopictus ./runBuild GCA_018139145.1_ASM1813914v1 birds Gymnogyps_californianus ./runBuild GCA_018296145.1_Otsh_v2.0 fish Oncorhynchus_tshawytscha @@ -683,30 +684,31 @@ ./runBuild GCA_023349425.1_jaAntSola1.0.p invertebrate Anthopleura_sola ./runBuild GCA_023515785.1_UTH_Rnor_SHR_Utx mammals Rattus_norvegicus ./runBuild GCA_023515805.1_UTH_Rnor_WKY_Bbb_1.0 mammals Rattus_norvegicus ./runBuild GCA_023634085.1_bFalChe1.pri birds Falco_cherrug ./runBuild GCA_023634115.1_bFalChe1.alt birds Falco_cherrug ./runBuild GCA_023634155.1_bFalPer1.pri birds Falco_peregrinus ./runBuild GCA_023634185.1_bFalPer1.alt birds Falco_peregrinus ./runBuild GCA_023634305.1_bFalBia1.alt birds Falco_biarmicus ./runBuild GCA_023637925.1_DD_ASM_B1a birds Phaethornis_superciliosus ./runBuild GCA_023637945.1_DD_ASM_B1 birds Phaethornis_superciliosus ./runBuild GCA_023638135.1_bFalBia1.pri birds Falco_biarmicus ./runBuild GCA_023851605.1_mTamTet1.pri mammals Tamandua_tetradactyla ./runBuild GCA_023853755.1_mTamTet1.alt mammals Tamandua_tetradactyla ./runBuild GCA_024140225.1_mSunEtr1.alt.cur mammals Suncus_etruscus ./runBuild GCA_024166345.1_mEleMax1_alternate_haplotype mammals Elephas_maximus_indicus +./runBuild GCA_024206055.2_ASM2420605v2 birds Gallus_gallus ./runBuild GCA_024294585.1_rVipLat1.pri vertebrate Vipera_latastei ./runBuild GCA_024364735.1_CEBAR_Bro_1.0 plants Boesenbergia_rotund ./runBuild GCA_025094165.1_mMesDen1_alternate_haplotype mammals Mesoplodon_densirostris ./runBuild GCA_025201965.1_rGopFla2.pat.asm vertebrate Gopherus_flavomarginatus ./runBuild GCA_025265405.1_mMesDen1_primary_haplotype mammals Mesoplodon_densirostris ./runBuild GCA_025617745.1_DUKEBGI_Hery_1.0 invertebrate Heliocidaris_erythrogramma ./runBuild GCA_025618425.1_DUKEBGI_Htub_1.0 invertebrate Heliocidaris_tuberculata ./runBuild GCA_026108075.1_ASM2610807v1 plants Chlamydomonas_reinhardtii ./runBuild GCA_026230045.1_mCorTow1.0.hap2 mammals Corynorhinus_townsendii ./runBuild GCA_026230055.1_mCorTow1.0.hap1 mammals Corynorhinus_townsendii ./runBuild GCA_026419925.1_bHarHar1 birds Harpia_harpyja ./runBuild GCA_026419965.1_mKogBre1_haplotype_1 mammals Kogia_breviceps ./runBuild GCA_026419985.1_mKogBre1_haplotype_2 mammals Kogia_breviceps ./runBuild GCA_026979555.1_bVidCha1_purged_dups_haplotype birds Vidua_chalybeata ./runBuild GCA_026979565.1_bVidCha1_merged_haplotype birds Vidua_chalybeata