4516d025b57857bdddbf393f5d82c6c2b91e22c3 hiram Sat Mar 18 09:26:01 2023 -0700 adding three per user request refs #29545 diff --git src/hg/makeDb/doc/birdsAsmHub/birds.orderList.tsv src/hg/makeDb/doc/birdsAsmHub/birds.orderList.tsv index ee6bdaa..9f707c4 100644 --- src/hg/makeDb/doc/birdsAsmHub/birds.orderList.tsv +++ src/hg/makeDb/doc/birdsAsmHub/birds.orderList.tsv @@ -9,47 +9,49 @@ GCF_003957555.1_bCalAnn1_v1.p Anna's hummingbird (BGI_N300 2019 refseq) GCF_000737465.1_Haliaeetus_leucocephalus-4.0 bald eagle GCF_000703405.1_ASM70340v1 bar-tailed trogon GCF_018691265.1_T.alba_DEE_v4.0 barn owl (U. Lausanne 2021) GCA_015227815.3_bHirRus1.alt.v3 Barn swallow (bHirRus1 v3 alternate hap 2021) GCA_015227805.3_bHirRus1.pri.v3 Barn swallow (bHirRus1 v3 primary hap 2021) GCF_005870125.1_lonStrDom2 Bengalese finch GCA_028500815.1_bRisTri1.patW.cur.20221130 black-legged kittiwake (bRisTri1.patW 2023) GCA_028501385.1_bRisTri1.mat.cur.20221130 black-legged kittiwake (bRisTri1.mat 2023) GCA_009819655.1_bSylAtr1.pri blackcap (2019) GCA_009819715.1_bSylAtr1.alt blackcap (alternate hap 2019) GCF_013377495.2_CAtr_DNAZoo_HiC_assembly black swan (v2 Queensland, Australia AKBS03 2022) GCA_019023105.1_LSU_DiBr_2.0 black-throated flowerpiercer GCF_002901205.1_cyaCae2 blue tit GCF_001604755.1_Lepidothrix_coronata-1.0 blue-crowned manakin +GCA_017639355.1_Aaes_hic blue-fronted amazon (AMXYW 2021) GCA_001420675.1_ASM142067v1 blue-fronted amazon (FVVF132 2015) GCA_019593555.1_cma1 brown eared-pheasant GCF_012460135.1_BPBGC_Mater_1.0 brown headed cowbird GCF_001039765.1_AptMant0 brown kiwi GCF_000695765.1_ASM69576v1 brown roatelo GCF_000238935.1_Melopsittacus_undulatus_6.3 budgerigar (v6.3 2021 WashU) GCA_012275265.1_bMelUnd1.mat budgerigar (maternal 2020) GCF_012275295.1_bMelUnd1.mat.Z budgerigar (maternal Z 2020 refseq) GCA_012275275.1_bMelUnd1.pat budgerigar (paternal 2020) GCF_003259725.1_athCun1 burrowing owl GCF_018139145.2_ASM1813914v2 California condor (v2 813 2022 refseq) GCA_006130075.1_GSC_cangoose_1.0 Canada goose (SJ_97 2019) GCA_009819585.1_bMerNub1.alt carmine bee-eater alternate hap pseudohaplotype 2019) GCA_009819595.1_bMerNub1.pri carmine bee-eater (2019) GCF_000002315.6_GRCg6a chicken (GRCg6a 2018) GCA_027408205.1_bGalGal5.alt chicken (Cobb bGalGal5 alternate hap 2022) GCA_027408225.1_bGalGal5.pri chicken (Cobb bGalGal5 primary hap 2022) +GCA_024206055.2_ASM2420605v2 chicken (Huxu 2023) GCA_027408255.1_bGalGal4.alt chicken (Ross bGalGal4 alternate hap 2022) GCA_027557775.1_bGalGal4.pri chicken (Ross bGalGal4 primary hap 2023) GCF_016700215.2_bGalGal1.pat.whiteleghornlayer.GRCg7w chicken white leghorn layer X broiler (leghorn haplotype v2 2021) GCF_016699485.2_bGalGal1.mat.broiler.GRCg7b chicken white leghorn layer X broiler (broiler haplotype 2021 v2 2021) GCF_003342845.1_notPer1 Chilean tinamou GCF_000747805.2_ChaPel_1.1 chimney swift (M959 v1.1 2014) GCF_000700745.2_ASM70074v2 chuck-will's-widow (BGI_N321 v2 2014) GCF_000247815.1_FicAlb1.5 collared flycatcher GCF_007115625.1_cibio_Scana_2019 common canary (domestic yellow sc_yellow_7_cibi 2019) GCF_022539315.1_serCan2020 common canary (serCan28SL12 2022) GCA_017976305.1_bCucCan1.alt common cuckoo (bCucCan1 alternate hap 2021) GCA_017976375.1_bCucCan1.pri common cuckoo (bCucCan1 primary hap 2021) GCA_027559525.1_bAcrTri1.alt common myna (bArcTri1 alternate hap 2023) GCA_027559615.1_bAcrTri1.pri common myna (bArcTri1 primary hap 2023) GCF_001447265.1_Sturnus_vulgaris-1.0 common starling @@ -145,30 +147,31 @@ GCA_027579665.1_bAmmNel1.alt Nelson's sparrow (bAmmNel1 alternate hap 2023) GCA_027579445.1_bAmmNel1.pri Nelson's sparrow (bAmmNel1 primary hap 2023) GCF_009650955.1_bCorMon1.pri New Caledonian crow (2019) GCA_009651025.1_bCorMon1.alt New Caledonian crow (alternate hap 2019) GCA_008692595.2_Cv_LA_2.0 northern bobwhite GCF_000690835.1_ASM69083v1 northern fulmar GCA_929447715.1_bAccGen1.1_alternate_haplotype northern goshawk (bAccGen1 v1 alternate hap 2022) GCA_929443795.2_bAccGen1.2 northern goshawk (bAccGen1 primary hap v2 2022 genbank) GCF_929443795.1_bAccGen1.1 northern goshawk (bAccGen1 primary hap v1 2022 refseq) GCF_003343035.1_aptRow1 Okarito brown kiwi GCA_023634185.1_bFalPer1.alt peregrine falcon (bFalPer1 alternate hap 2022) GCA_023634155.1_bFalPer1.pri peregrine falcon (bFalPer1 primary hap 2022) GCF_000337955.1_F_peregrinus_v1.0 peregrine falcon (BGI 2013) GCA_020745805.1_bTheCae1.alt.cur plumbeous ibis (bTheCae1 alternate hap 2021) GCA_020745775.1_bTheCae1.pri.cur plumbeous ibis (bTheCae1 primary hap 2021) +GCA_000332375.2_ASM33237v2 Puerto Rican parrot (LU 182127 2020) GCA_008658365.1_bAlcTor1_primary razorbill (2006_11_07_Graehlm_vinge_78 2019) GCA_008658355.1_bAlcTor1_alternate razorbill (alternate hap 2006_11_07_Graehlm_vinge_78 2019) GCA_009769465.1_bTauEry1.pri red-crested turaco (2019) GCA_009764505.1_bTauEry1.alt red-crested turaco (alternate hap 2019) GCA_015220175.1_bPogPus1.alt Red-fronted tinkerbird (bPogPus1 alternate hap 2020) GCA_015220805.1_bPogPus1.pri red-fronted tinkerbird (bPogPus1 primary hap 2020) GCA_019345075.1_ASM1934507v1 red-legged partridge GCA_009819825.1_bCarCri1.pri red-legged seriema (2019) GCA_009819485.1_bCarCri1.alt red-legged seriema (alternate hap 2019) GCF_000690875.1_ASM69087v1 red-throated loon GCF_000710305.1_ASM71030v1 rhinoceros hornbill GCA_016880875.1_bAcaChl1.alt rifleman (bAcaChl1 alternate hap 2021) GCA_016904835.1_bAcaChl1.pri rifleman (bAcaChl1 primary hap 2021) GCF_004143745.1_ASM414374v1 ring-necked pheasant GCF_000337935.1_Cliv_1.0 rock pigeon (Danish tumbler 2013 BGI)