923105258f47bd9b394d707c53e8626856403bfb hiram Mon Mar 13 16:39:26 2023 -0700 adding four to catch up RefSeq assemblies refs #29545 diff --git src/hg/makeDb/doc/plantsAsmHub/plants.orderList.tsv src/hg/makeDb/doc/plantsAsmHub/plants.orderList.tsv index dd0202e..09b6564 100644 --- src/hg/makeDb/doc/plantsAsmHub/plants.orderList.tsv +++ src/hg/makeDb/doc/plantsAsmHub/plants.orderList.tsv @@ -1,207 +1,208 @@ GCF_016808095.1_ASM1680809v1 adzuki bean (LongXiaoDou No.4 2021) GCF_001190045.1_Vigan1.1 adzuki bean (Jingnong 6 2015) GCF_000442705.1_EG5 African oil palm GCF_000147395.1_OglaRS2 African rice (2021) GCF_004799145.1_ASM479914v1 algarrobo blanco GCF_902201215.1_ALMONDv2 almond GCF_022539505.1_APGP_CSIRO_Lrig_0.1 annual ryegrass (FL_2022 2022) GCF_937616625.1_ddMerAnnu1.1 annual mercury (primary hap 2022) GCF_002114115.1_ASM211411v1 apple (Golden Delicious X9273 #13 2017 refseq) GCF_014843425.1_RJC1_Hi-C Barbados nut GCF_000219495.3_MedtrA17_4.0 barrel medic (A17 2014) GCA_002024945.1_R108_v._1.0 barrel medic (HM340 2017) GCF_003473485.1_MtrunA17r5.0-ANR barrel medic (2018) GCF_002917755.1_EL10_1.0 beet (EL10 2021 USDA) GCF_001995035.1_ASM199503v1 bitter melon GCF_000002775.5_P.trichocarpa_v4.1 black cottonwood (v4.1 Nisqually-1 2022) GCF_004153795.1_AHAU_CSS_1 black tea GCA_907166925.1_wheat_cv_fielder_v1_assembly bread wheat (Fielder 2021) GCF_018294505.1_IWGSC_CS_RefSeq_v2.1 bread wheat (Chinese Spring 2021, UC Davis) GCF_000208745.1_Criollo_cocoa_genome_V2 cacao GCF_900626175.2_cs10 Cannabis sativa (Harvard OEB 2019) GCA_001865755.1_ASM186575v1 Cannabis sativa (Cannatonic 2016) GCA_003660325.2_Oct15_3.7Mb_N50_Jamaican_Lion_Assembly Cannabis sativa (Jamaican Lion DASH 2019) GCF_000710875.1_Pepper_Zunla_1_Ref_v1.0 capsicum (Zunla-1 2015 refseq) GCF_001625215.1_ASM162521v1 carrot GCF_001659605.2_M.esculenta_v8 cassava (v8 AM560-2 2021 DOE) GCF_000151685.1_JCVI_RCG_1.1 castor bean (Hale 2011 JCVI) GCF_019578655.1_ASM1957865v1 castor bean (wild-type WT05 2021) GCF_023119035.1_UniMelb_Shisp_WGS_1.0 eudicots chia (TCC Black 2014 2022) GCF_000331145.1_ASM33114v1 chickpea GCF_002994745.2_RchiOBHm-V2 China rose (Old Blush v2 2019) GCA_024364735.1_CEBAR_Bro_1.0 Chinese keys (BR_CEBAR01 2022) GCF_000315295.1_Pbr_v1.0 Chinese white pear (Dangshansuli 2012) GCF_019419815.1_Pyrus_bretschneideri_v1 Chinese white pear (Hongxiangsu 2021) GCF_000493195.1_Citrus_clementina_v1.0 clementine GCF_000143415.4_v1.0 club-mosses (2010) GCA_001021135.1_ASM102113v1 club-mosses (Aurea 2015) GCF_003713225.1_Cara_1.0 coffee C.arabica GCF_003713205.1_Ceug_1.0 coffee C.eugenioides GCF_000499845.1_PhaVulg1_0 common bean GCF_000826755.1_ZizJuj_1.1 common jujube (Dongzao 2015) GCF_020796205.1_ASM2079620v1 common jujube (AT0 2021) GCF_002127325.2_HanXRQr2.0-SUNRISE common sunflower GCF_000715135.1_Ntab-TN90 common tobacco GCF_002906115.1_CorkOak1.0 cork oak GCF_000987745.1_ASM98774v1 cotton G.hirsutum (BGI 2015) GCF_007990345.1_Gossypium_hirsutum_v2.1 cotton G.hirsutum (HudsonAlpha 2021) GCF_000327365.1_Graimondii2_0 cotton G.raimondii GCF_004118075.2_ASM411807v2 cowpea (IT97K-499-35 v2 2019) GCF_002738365.1_Cmos_1.0 crookneck pumpkin GCF_000004075.3_Cucumber_9930_V3 cucumber GCA_001662545.1_ASM166254v1 damask rose (2016) GCF_009389715.1_palm_55x_up_171113_PBpolish2nd_filt_p date palm (Barhee BC4 2019) GCF_000413155.1_DPV01 date palm (Khalas 2013) GCF_014633365.1_ASM1463336v1 date-plum (Yz01 2020) GCF_904849725.1_MorexV3_pseudomolecules_assembly domesticated barley (H.vulgare 2021 refseq) GCF_002303985.1_Duzib1.0 durian GCA_000787875.1_SME_r2.5.1 eggplant (2014) GCF_932294415.1_dhQueRobu3.1 English oak (primary hap 2022) GCF_001411555.2_Walnut_2.0 English walnut GCF_002878395.1_UCD10Xv1.1 eudicots bell pepper (UCD-10X-F1 2018) GCF_004785595.1_Jm3101_v1.0 eudicots J.microcarpa x regia (UCDavis 2019) GCF_004379255.1_SspV2 eudicots S.splendens huo1 (BFU 2021) GCF_000495115.1_PopEup_1.0 Euphrates poplar GCF_916048215.2_drMalSylv7.2 European crab apple (2022) GCA_000831365.1_hl_SW_version_1.0.fasta European hop (Shinshu Wase 2014) GCF_000633955.1_Cs false flax GCF_000309985.2_CAAS_Brap_v3.01 field mustard GCA_002180455.1_ASM218045v1 finger millet (ML-365 2017) GCF_000263155.2_Setaria_italica_v2.0 foxtail millet GCF_001876935.1_Aspof.V1 garden asparagus GCF_018446385.1_Zo_v1.1 ginger GCF_001531365.2_CcrdV1.1 globe artichoke (v1.1 2C 2018) GCF_002575655.1_Aet_v4.0 goatgrass A.strangulata GCF_001957025.1_Aet_MR_1.0 goatgrass A.tauschii GCA_003024255.1_Red5_PS1_1.69.0 golden kiwifruit (Red5 2018) GCA_001981405.1_ASM198140v1 great duckweed (9509 2017) GCF_000733215.1_ASM73321v1 green algae A.protothecoides (0710 2014) GCF_002220235.1_ASM222023v1 green algae B.prasinos (RCC1105 2012) GCF_000002595.2_Chlamydomonas_reinhardtii_v5.5 green algae C.reinhardtii (v2 CC-503 cw92 mt+ 2018 refseq) GCA_026108075.1_ASM2610807v1 green algae C.reinhardtii (CC-5816 2022) GCF_000258705.1_Coccomyxa_subellipsoidae_v2.0 green algae C.subellipsoidea (C-169 2012) GCF_000147415.1_v_1.0 green algae C.variabilis (NC64A 2010 refseq) GCA_000708835.1_ASM70883v1 green algae K.nitens (NIES-2285 2014) GCF_000090985.2_ASM9098v2 green algae M.commoda (RCC299 2009) GCF_000611645.1_mono_v1 green algae M.neglectum (SAG 48.87 2015) GCF_000151265.2_Micromonas_pusilla_CCMP1545_v2.0 green algae M.pusilla (CCMP1545 2009) GCF_000092065.1_ASM9206v1 green algae O.lucimarinus (CCE9901 2007) GCF_000214015.3_version_140606 green algae O.tauri (RCC4221 2014) GCF_000143455.1_v1.0 green algae V.carteri (Eve 2010) GCF_009805555.1_ASM980555v1 green chiretta (2019) GCF_005286985.1_Setaria_viridis_v2.0 green foxtail GCA_002240015.2_TDr96_F1_Pseudo_Chromosome_v1.0 Guinea yam (TDr96_F1 2017) GCF_002211085.1_PHallii_v3.1 Hall's panicgrass GCF_907164915.1_dImpGla2.1 eudicots Himalayan balsam GCF_010389155.1_C_canadensis_v1 horseweed GCF_003935025.1_Abrus_2018 Indian licorice GCF_000346735.1_P.mume_V1.0 Japanese apricot GCF_001879475.1_Asagao_1.1 Japanese morning glory GCF_001433935.1_IRGSP-1.0 Japanese rice GCA_001602275.1_ASM160227v1 Korean lawngrass (Nagirizaki 2016) GCF_002870075.3_Lsat_Salinas_v8 lettuce eudicots (Salinas v8 2020) GCA_000227445.1_Legassy_V2 lettuce eudicots (Salinas 2011) GCF_000004255.2_v.1.0 lyrate rockcress GCF_013358625.1_SCU_Mint_v3 macadamia nut GCA_000949345.1_ASM94934v1 Madagascar periwinkle (Sunstorm Apricot 2015) GCF_902167145.1_Zm-B73-REFERENCE-NAM-5.0 maize GCF_000231095.2_ObraRS2 malo sina (v2 2021) GCF_011075055.1_CATAS_Mindica_2.1 mango GCF_002575655.2_Aet_v5.0 monocots GCF_000002425.4_Phypa_V3 mosses GCF_000414095.1_ASM41409v2 mulberry M.notabilis GCF_000741045.1_Vradiata_ver6 mung bean (VC1973A 2015 refseq) -GCF_000313045.1_ASM31304v1 muskmelon +GCF_025177605.1_USDA_Cmelo_AY_1.0 muskmelon (AY 2022) +GCF_000313045.1_ASM31304v1 muskmelon (DHL92 2012) GCF_001865875.1_LupAngTanjil_v1.0 narrow-leaved blue lupine GCF_018873765.1_Tspe_v1 New South Wales waratah (Mountain lineage 2021) GCF_003573695.1_ASM357369v1 opium poppy GCF_001605985.2_ASM160598v2 orchid D.catenatum GCF_001263595.1_ASM126359v1 orchid P.equestris GCF_000150535.2_Papaya1.0 papaya GCF_000346465.2_Prunus_persica_NCBIv2 peach GCF_003086295.2_arahy.Tifrunner.gnm1.KYV3 peanut GCA_002174835.2_ASM217483v2 pearl millet (Tift 23D2B1-P1-P5 2018) GCF_018687715.1_C.illinoinensisPawnee_v1 pecan GCF_019359855.1_MPB_Lper_Kyuss_1697 perennial ryegrass (Kyuss_39 2021) GCF_000327365.2_Graimondii2_0v2 Peruvian cotton (G.raimondii 2012 DOE) GCF_025698545.1_ASM2569854v1 Peruvian cotton (GPD5lz 2022) GCF_000340665.2_C.cajan_V1.1 pigeon pea (v2 2016 BGI) GCF_001540865.1_ASM154086v1 pineapple GCF_000375325.1_Caprub1_0 pink shepherd's-purse GCF_008641045.1_PisVer_v2 pistachio GCF_008831285.2_ASM883128v2 pocket water lily (Beijing-Zhang1983 2022) GCF_007655135.1_ASM765513v2 pomegranate GCF_019186545.1_ASM1918654v1 potato S.stenotomum (F172 2021) GCA_010127505.1_ASM1012750v1 potato S.tuberosum (Dihaploid 'C-13' 2020) GCF_000226075.1_SolTub_3.0 potato S.tuberosum (DM 1-3 516 R44 2011) GCA_020169555.1_solTubStieglitzHap1 potato S.tuberosum (hap 1 of 4 Otava Stieglitz 2021) GCA_020169535.1_solTubStieglitzHap2 potato S.tuberosum (hap 2 of 4 Otava Stieglitz 2021) GCA_020169585.1_solTubHeraHap1 potato S.tuberosum (hap 3 of 4 Otava Hera 2021) GCA_020169575.1_solTubHeraHap2 potato S.tuberosum (hap 4 of 4 Otava Hera 2021) GCA_014189475.1_ASM1418947v1 potato S.tuberosum (RH89-039-16 2020) GCA_014189305.1_ASM1418930v1 potato S.tuberosum (alt pseudohaplotype RH89-039-16 2020) GCF_900185275.1_falcon-dt-bn potato S.verrucosum (2019) GCF_001683475.1_ASM168347v1 quinoa GCF_000801105.1_Rs1.0 radish GCF_000686985.2_Bra_napus_v2.0 rape (ZS11 2017) GCF_020379485.1_Da-Ae rape (Da-Ae 2021) GCF_020283565.1_ARS_RC_1.1 eudicots red clover (HEN17-A07 2021) GCF_003073215.2_Tu2.1 red wild einkorn wheat (G1812 2018) GCF_018835915.1_ASM1883591v1 eudicots rice bean (VRB-3 Himshakti 2021) GCF_004353265.1_EGFV_Vit.rip_1.0 riverbank grape GCF_016545825.1_ASM1654582v1 rose gum (2021) GCF_000612305.1_Egrandis1_0 rose gum (BRASUZ1 2014) GCF_006381635.1_ASM638163v2 rose of Sharon GCF_001654055.1_ASM165405v1 rubber tree GCF_000365185.1_Chinese_Lotus_1.1 sacred lotus GCF_000478725.1_Eutsalg1_0 saltwater cress GCF_900635055.1_Sole10x-PRISCAF scented satinash GCF_000512975.1_S_indicum_v1.0 sesame GCF_900635035.1_Rarg10x-PRISCAF silver malletwood (14919 2019) GCF_020921035.1_ASM2092103v1 silver malletwood (NSW1041297 2021) GCF_005239225.1_ASM523922v1 silver poplar GCF_933775445.1_drPotAnse1.1 silverweed cinquefoil (primary hap 2022) GCF_000003195.3_Sorghum_bicolor_NCBIv3 sorghum (BTx623 2017) GCA_003482435.1_Corteva_Sorghum_ONT_TX430_1.0 sorghum (Tx430 2018) GCF_000004515.6_Glycine_max_v4.0 soybean (US DOE JGI-PGF v2 2021) GCF_000463585.1_ASM46358v1 spider flower GCF_002007265.1_ASM200726v1 spinach GCF_000504015.1_Mimgu1_0 spotted monkey flower GCF_000005505.3_Brachypodium_distachyon_v3.0 stiff brome GCA_000511835.1_FAN_r1.1 strawberry (Reikou 2013) GCF_002207925.1_PAV_r1.0 sweet cherry GCF_000317415.1_Csi_valencia_1.0 sweet orange GCA_002525835.2_ipoBat4 sweet potato (Taizhong6 2017) GCF_016808335.1_P.virgatum_v5 switchgrass GCA_002319775.1_Ft1.0 Tartarian buckwheat (Pinku1 2017) GCF_000001735.4_TAIR10.1 thale cress (tair10.1 Columbia 2018) GCF_013401445.1_ASM1340144v1 thunder duke vine GCF_001879085.1_NIATTr2 tobacco N.attenuata GCF_000390325.2_Ntom_v01 tobacco N.tomentosiformis GCF_000188115.5_SL3.1 tomato (v3.1 Heinz 1706 2018) GCF_000612285.1_Gossypium_arboreum_v1.0 tree cotton (Shixiya1 2015 BGI) GCF_025698485.1_ASM2569848v2 tree cotton (Shixiya-1 2022) GCF_003576645.1_ASM357664v1 trilobed morning glory GCF_022201045.2_DVS_A1.0 Valencia sweet orange 2022 GCF_001633185.2_ValleyOak3.2 valley oak (v3.2 2019) GCA_023053565.1_dmAquExim1.0.p Van Houtte's columbine (PFEx6 2022) GCA_023053535.1_dmAquExim1.0.a Van Houtte's columbine (alt pseudohaplotype PFEx6 2022) GCF_002806865.1_ASM280686v2 vegetable marrow GCF_009727055.1_ASM972705v1 wax gourd GCF_009730915.1_TDr96_F1_v2_PseudoChromosome.rev07_lg8_w22_25.fasta white yam GCF_000695525.1_BOL wild cabbage GCF_002168275.1_ASM216827v2 wild Colombian cocoa GCF_002162155.2_WEW_v2.1 wild emmer wheat (Zavitan Atlit2015 v2.1 2019) GCF_000313855.2_ASM31385v2 wild Malaysian banana GCF_002742605.1_O_europaea_v1 wild olive GCF_000817695.3_aradu.V14167.gnm2.J7QH wild peanut A.duranensis (v2 V14167 2020) GCF_000816755.2_Araip1.1 wild peanut A.ipaensis GCF_004193775.1_ASM419377v2 wild soybean GCF_000184155.1_FraVesHawaii_1.0 wild strawberry (2011 refseq) GCF_001406875.1_SPENNV200 wild tomato S.pennellii GCF_000003745.3_12X wine grape (PN40024 2009) GCA_002922885.1_Chkhaveri_assembly01 wine grape (Chkhaveri 2017) GCA_001920985.1_ASM192098v1 winter cress (G-type 2016) GCF_002738345.1_Cmax_1.0 winter squash GCF_000393655.1_Nsyl wood tobacco GCA_001687265.1_Brassica_juncea_var_tumida_T84-66_v1 zha cai (T84-66 inbred line 2016)