e0b3a8e4497a0953cf6689431d1b287f6d4456a7 lrnassar Thu Mar 16 10:04:43 2023 -0700 Getting rid of the rest of the CGAP hgGene entries, refs #30695 diff --git src/hg/hgGene/hgGeneData/C_elegans/links.ra src/hg/hgGene/hgGeneData/C_elegans/links.ra index 1e84271..f6e1b57 100644 --- src/hg/hgGene/hgGeneData/C_elegans/links.ra +++ src/hg/hgGene/hgGeneData/C_elegans/links.ra @@ -1,81 +1,81 @@ # Worm-specific link info. # This contains info to construct the quick links. name genome tables sangerGene idSql select chrom,txStart+1,txEnd from sangerGene where name = '%s' name family tables sangerGene idSql select name from sangerGene where name = '%s' name wormBase shortLabel WormBase tables sangerGene idSql select name from sangerGene where name = '%s' url http://www.wormbase.org/db/gene/gene?name=%s priority 10 name palTrack shortLabel Other Species FASTA tables sangerGene idSql select chrom,txStart+1,txEnd,name from sangerGene where name = '%s' url ../cgi-bin/hgPal?g=sangerGene&c=%s&l=%s&r=%s&i=%s hgsid on dbInUrl on priority 1 #name moped #shortLabel MOPED #tables sangerLinks #idSql select name from sangerGene where name = '%s' #url http://moped.proteinspire.org/?proteinId=%s #priority 10 name uniProt tables sangerLinks idSql select protName from sangerLinks where orfName = '%s' nameSql select protName from sangerLinks where orfName = '%s' name alphafold tables sangerLinks idSql select protName from sangerLinks where orfName = '%s' name refSeq shortLabel RefSeq tables sangerToRefSeq idSql select value from sangerToRefSeq where name = '%s' url https://www.ncbi.nlm.nih.gov/nuccore/%s?report=GenBank priority 10 name locusLink hide name genBank hide name pubMed shortLabel PubMed tables orfToGene idSql select value from orfToGene where name = '%s' url https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Search&db=PubMed&term=%s&doptcmdl=DocSum&tool=genome.ucsc.edu priority 10 name geneCards hide name stanfordSource hide -name cgap -hide +#name cgap +#hide name ensembl url http://www.ensembl.org/Caenorhabditis_elegans/geneview?transcript=%s name aceView shortLabel AceView tables kgXref idSql select geneSymbol from kgXref where kgID = '%s' priority 10 url https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?db=worm&l=%s