e0b3a8e4497a0953cf6689431d1b287f6d4456a7 lrnassar Thu Mar 16 10:04:43 2023 -0700 Getting rid of the rest of the CGAP hgGene entries, refs #30695 diff --git src/hg/hgGene/hgGeneData/Mouse/links.ra src/hg/hgGene/hgGeneData/Mouse/links.ra index 308114d..f3ba198 100644 --- src/hg/hgGene/hgGeneData/Mouse/links.ra +++ src/hg/hgGene/hgGeneData/Mouse/links.ra @@ -1,50 +1,50 @@ # Mouse-specific link info. name jax shortLabel MGI tables kgXref idSql select uniProt.extDbRef.extAcc1 from uniProt.extDbRef,uniProt.extDb,kgXref where uniProt.extDb.val = 'MGI' and uniProt.extDb.id = uniProt.extDbRef.extDb and uniProt.extDbRef.acc = kgXref.spID and kgXref.kgID = '%s' priority 10 url http://www.informatics.jax.org/marker/%s #name gepis #shortLabel Gepis Tissue #tables kgXref #idSql select geneSymbol from kgXref where kgID = '%s' #url http://research-public.gene.com/cgi-bin/genentech/genehub-gepis/web_search.pl?intype=1&xrefid=%s&species=mouse #priority 10 name geneCards shortLabel GeneCards tables kgXref idSql select geneSymbol from kgXref where kgID = '%s' url http://www.genecards.org/cgi-bin/carddisp.pl?gene=%s priority 10 -name cgap -url http://cgap.nci.nih.gov/Genes/GeneInfo?ORG=Mm&CID=%s +#name cgap +#url http://cgap.nci.nih.gov/Genes/GeneInfo?ORG=Mm&CID=%s name reactome shortLabel Reactome tables proteome.spReactomeEvent kgXref idSql select spReactomeId.spID from proteome.spReactomeId,proteome.spVariant,kgXref where kgXref.kgID = '%s' and kgXref.spID=variant and spReactomeId.spID=parent; url http://www.reactome.org/content/query?q=%s priority 10 name ensembl url http://www.ensembl.org/Mus_musculus/geneview?transcript=%s name geneNetwork shortLabel GeneNetwork tables geneNetworkId idSql select Id from geneNetworkId, knownToRefSeq where Id = value and name='%s' url http://www.genenetwork.org/webqtl/WebQTL.py?cmd=sch&refseq=%s&species=mouse priority 10 name stanfordSource shortLabel SOURCE tables kgXref idSql select mRNA from kgXref where kgID = '%s' url http://source-search.princeton.edu/cgi-bin/source/sourceResult?organism=Mm&option=Number&criteria=%s&choice=Gene priority 10