e0b3a8e4497a0953cf6689431d1b287f6d4456a7
lrnassar
  Thu Mar 16 10:04:43 2023 -0700
Getting rid of the rest of the CGAP hgGene entries, refs #30695

diff --git src/hg/hgGene/hgGeneData/Rat/links.ra src/hg/hgGene/hgGeneData/Rat/links.ra
index 48d9e0b..09ddd07 100644
--- src/hg/hgGene/hgGeneData/Rat/links.ra
+++ src/hg/hgGene/hgGeneData/Rat/links.ra
@@ -1,36 +1,36 @@
 # Rat-specific link info.
 
 name rgd
 shortLabel RGD
 tables kgXref
 priority 10
 idSql select uniProt.extDbRef.extAcc1 from uniProt.extDbRef,uniProt.extDb,kgXref where uniProt.extDb.val = 'RGD' and uniProt.extDb.id = uniProt.extDbRef.extDb and uniProt.extDbRef.acc = kgXref.spID and kgXref.kgID = '%s' 
 url http://rgd.mcw.edu/tools/genes/genes_view.cgi?id=%s
 
-name cgap
-url http://cgap.nci.nih.gov/Genes/GeneInfo?ORG=Rn&CID=%s
+#name cgap
+#url http://cgap.nci.nih.gov/Genes/GeneInfo?ORG=Rn&CID=%s
 
 name reactome
 shortLabel Reactome
 tables proteome.spReactomeEvent kgXref
 idSql select spReactomeId.spID from proteome.spReactomeId,proteome.spVariant,kgXref where kgXref.kgID = '%s' and kgXref.spID=variant and spReactomeId.spID=parent;
 url http://www.reactome.org/content/query?q=%s
 priority 10
 
 name ensembl
 url http://www.ensembl.org/Rattus_norvegicus/geneview?transcript=%s
 
 name geneNetwork
 shortLabel GeneNetwork
 tables geneNetworkId
 idSql select Id from geneNetworkId, knownToRefSeq where Id = value and name='%s'
 url http://www.genenetwork.org/webqtl/WebQTL.py?cmd=sch&refseq=%s&species=rat
 priority 10
 
 name stanfordSource
 shortLabel SOURCE
 tables kgXref
 idSql select mRNA from kgXref where kgID = '%s'
 url http://source-search.princeton.edu/cgi-bin/source/sourceResult?organism=Rn&option=Number&criteria=%s&choice=Gene
 priority 10