61b8f5004b8c9249e46f1b87fe9d34c369b97450
angie
  Thu Mar 23 13:30:50 2023 -0700
Adding some sequences for older proposed recombinants that would be removed from the tree by a harsher application of filters otherwise.

diff --git src/hg/utils/otto/sarscov2phylo/includeRecombinants.tsv src/hg/utils/otto/sarscov2phylo/includeRecombinants.tsv
index 4d97d6c..8fd4df0 100644
--- src/hg/utils/otto/sarscov2phylo/includeRecombinants.tsv
+++ src/hg/utils/otto/sarscov2phylo/includeRecombinants.tsv
@@ -5,63 +5,72 @@
 England/ALDP-325CFB2/2022	422	
 OV626513.1	422	
 OV628319.1	422	
 OV720067.1	422	
 OV721520.1	422	
 EPI_ISL_8166781	422	
 EPI_ISL_8610834	422	
 EPI_ISL_8865709	422	
 EPI_ISL_8898412	422	
 EPI_ISL_8438332	437	
 EPI_ISL_10262189	437	
 EPI_ISL_10263151	437	
 EPI_ISL_10263152	437	
 EPI_ISL_10261577	437	
 EPI_ISL_10305529	437	
+EPI_ISL_11157235	437	
+EPI_ISL_11632598	437	
+EPI_ISL_11632599	437	
+EPI_ISL_11632600	437	
+EPI_ISL_11993539	437	
+EPI_ISL_11750046	437	
 OM392955.1	439	
 OM393452.1	439	
 OM372355.1	439	
 OM344043.1	439	
 OM344166.1	439	
 OM344238.1	439	
-OM272834.1	439	
+OM272834.2	439	
 OM835119.1	439	
 OM835120.1	439	
 EPI_ISL_8720194	439	
 EPI_ISL_8981459	439	
 EPI_ISL_8981712	439	
 EPI_ISL_8981824	439	
 EPI_ISL_9088187	439	
 EPI_ISL_9147438	439	
 EPI_ISL_9147935	439	
 EPI_ISL_10389336	439	
 EPI_ISL_10389339	439	
+England/NORT-YNNYFNT/2022	441	
 England/PLYM-32FEF76/2022	441	
 England/PLYM-332E079/2022	441	
 England/PLYM-332E510/2022	441	
 England/PLYM-336A651/2022	441	
 England/PLYM-33BB5CD/2022	441	
 OV757286.1	441	
 OV758622.1	441	
 OV768982.1	441	
 OV781287.1	441	
 OV807225.1	441	
+OX069043.1	441	
 EPI_ISL_9125312	441	
 EPI_ISL_9175215	441	
 EPI_ISL_9026013	441	
 EPI_ISL_9062592	441	
 EPI_ISL_9296739	441	
+EPI_ISL_10630040	441	
 EPI_ISL_9959921	444	XD
 EPI_ISL_9879437	444	XD
 EPI_ISL_9879436	444	XD
 EPI_ISL_9863764	444	XD
 EPI_ISL_9857381	444	XD
 EPI_ISL_9791275	444	XD
 EPI_ISL_9449070	444	XD
 EPI_ISL_9166910	444	XD
 EPI_ISL_9518370	444	XD
 EPI_ISL_9791300	444	XD
 EPI_ISL_10096770	444	XD
 EPI_ISL_10014373	444	XD
 EPI_ISL_10207240	444	XD
 EPI_ISL_10210832	444	XD
 EPI_ISL_10352397	444	XD