255bef7f94a872911184ea049071b1ccbc8983fe hiram Tue Mar 21 13:59:51 2023 -0700 forgot to reference chrAlias06 refs #30544 diff --git src/hg/hubApi/tests/makefile src/hg/hubApi/tests/makefile index 850e3a3..1778251 100644 --- src/hg/hubApi/tests/makefile +++ src/hg/hubApi/tests/makefile @@ -36,31 +36,31 @@ test29 test39 test40 test41 test42 test43 test44 test45 test46 test47 \ test48 test49 test50 test51 test52 test53 test54 test55 test56 test57 \ multiTrack1 listSchema: schema01 schema02 schema03 schema04 schema05 schema06 schema07 \ schema08 schema09 schema10 schema11 schema12 getSequence: getSeq01 getSeq02 getSeq03 getSeq04 getSeq05 wigData: wig01 wig02 wig03 wig04 wig05 wig06 wig07 wig08 wig09 wig10 \ wig11 wig12 wig13 wig14 wig15 wig16 wig17 wig18 wig19 wig20 \ wig21 wig22 wig23 wig24 search: search01 -chrAlias: chrAlias01 chrAlias02 chrAlias03 chrAlias04 chrAlias05 +chrAlias: chrAlias01 chrAlias02 chrAlias03 chrAlias04 chrAlias05 chrAlias06 supportedTypes: altGraphX barChart chain ctgPos expRatio \ interact netAlign peptideMapping pgSnp supportedTypes0: altGraphX barChart chain ctgPos expRatio factorSource gvf \ interact netAlign peptideMapping pgSnp errorTests: err01 err02 err03 err04 err05 err06 err07 err08 err09 err10 \ err11 err12 err13 err14 err15 err16 err17 err18 err19 err20 \ err21 err22 err23 err24 err25 err26 err27 err28 err29 err30 \ err31 err32 err33 err34 err35 err36 err37 err38 err39 err40 \ err41 err42 err43 err44 err45 err46 err47 err48 err49 err50 notSupported: notSup01 notSup02 notSup03 notSup07 notSup10 @@ -805,30 +805,31 @@ # testing always protected tracks, even with a range err48: setOutput @printf "### $@ ### '${SERVERNAME}.edu/getData/track?tracks=gold,gap,decipher;genome=hg38;jsonOutputArrays=1;chrom=chr2;start=16129261;end=16163278'\n" @./jsonConsumer.pl -serverName="${SERVERNAME}" -endpoint="/getData/track" -genome=hg38 -track=gold,gap,decipher -jsonOutputArrays -chrom=chr2 -start=16129261 -end=16163278 2>&1 | sed -e 's/, /,\n/g; s#http.*/getData#/getData#;' | egrep -v "${excludeLines}" | gzip -c > testOutput/$@.gz @zdiff expected/$@.gz testOutput/$@.gz # testing protected tracks that are allowed if not whole genome err49: setOutput @printf "### $@ ### '${SERVERNAME}.edu/getData/track?tracks=gold,gap,omimGene2;genome=hg38;jsonOutputArrays=1;chrom=chr2;start=16129261;end=16163278'\n" @./jsonConsumer.pl -serverName="${SERVERNAME}" -endpoint="/getData/track" -genome=hg38 -track=gold,gap,omimGene2 -jsonOutputArrays -chrom=chr2 -start=16129261 -end=16163278 2>&1 | sed -e 's/, /,\n/g; s#http.*/getData#/getData#;' | egrep -v "${excludeLines}" | gzip -c > testOutput/$@.gz @zdiff expected/$@.gz testOutput/$@.gz # testing chrom alias for a hub that doesn't have any aliases err50: setOutput + @printf "### $@ ### '${SERVERNAME}.edu/getData/track?tracks=assembly;genome=araTha1;chrom=chrPtld;hubUrl=http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt'\n" @./jsonConsumer.pl -serverName="${SERVERNAME}" -endpoint="/getData/track" -hubUrl="http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt" -genome="araTha1" -track="assembly" -chrom="chrPtld" 2>&1 | sed -e 's/, /,\n/g; s#http.*/getData#/getData#;' | egrep -v "${excludeLines}" | gzip -c > testOutput/$@.gz @zdiff expected/$@.gz testOutput/$@.gz ##################### wiggle data ########################################### # classic wiggle with wig table and wib file wig01: setOutput @printf "### $@ '${SERVERNAME}/getData/track?track=gc5Base;genome=ce4;maxItemsOutput=5'\n" @./jsonConsumer.pl -serverName="${SERVERNAME}" -endpoint="/getData/track" -genome=ce4 -track=gc5Base -maxItemsOutput=5 2>&1 | egrep -v "${excludeLines}" | sed -e 's#https://.*/getData#/getData#;' | gzip -c > testOutput/$@.gz @zdiff expected/$@.gz testOutput/$@.gz # classic wiggle with wig table and wib file with chrom specified wig02: setOutput @printf "### $@ '${SERVERNAME}/getData/track?track=gc5Base;genome=ce4;chrom=chrIV;maxItemsOutput=5'\n" @./jsonConsumer.pl -serverName="${SERVERNAME}" -endpoint="/getData/track" -genome=ce4 -track=gc5Base -chrom=chrIV -maxItemsOutput=5 2>&1 | egrep -v "${excludeLines}" | sed -e 's#https://.*/getData#/getData#;' | gzip -c > testOutput/$@.gz @zdiff expected/$@.gz testOutput/$@.gz