e333353435bde66c659754f02966057bf191b515 hiram Wed Mar 22 15:19:28 2023 -0700 a couple of assemblies per user request refs #29545 diff --git src/hg/makeDb/doc/asmHubs/master.run.list src/hg/makeDb/doc/asmHubs/master.run.list index 12c3473..b139a1e 100644 --- src/hg/makeDb/doc/asmHubs/master.run.list +++ src/hg/makeDb/doc/asmHubs/master.run.list @@ -396,30 +396,31 @@ ./runBuild GCA_004367855.1_ASM436785v1 invertebrate Oikopleura_vanhoeffeni ./runBuild GCA_004367875.1_ASM436787v1 invertebrate Oikopleura_albicans ./runBuild GCA_004367895.1_ASM436789v1 invertebrate Oikopleura_longicauda ./runBuild GCA_004367955.1_ASM436795v1 invertebrate Bathochordaeus_stygius ./runBuild GCA_004367975.1_ASM436797v1 invertebrate Mesochordaeus_erythrocephalus ./runBuild GCA_004368075.1_ASM436807v1 invertebrate Fritillaria_borealis ./runBuild GCA_004765925.1_PBRC_Esco_1.0 invertebrate Euprymna_scolopes ./runBuild GCA_004786255.1_Pads_1.0 vertebrate Pyxicephalus_adspersus ./runBuild GCA_004799585.1_ASM479958v1 bacteria Shigella_flexneri_5a_str._M90T ./runBuild GCA_006130075.1_GSC_cangoose_1.0 birds Branta_canadensis ./runBuild GCA_006229205.1_meerkat_22Aug2017_6uvM2_HiC mammals Suricata_suricatta ./runBuild GCA_006384855.1_TSEL_PacBio_SMRT plants Tetraselmis_striata ./runBuild GCA_006516635.1_Aalbo_alts_of_PRJNA530512 invertebrate Aedes_albopictus ./runBuild GCA_006542485.1_ASM654248v1 fungi Monascus_purpureus ./runBuild GCA_007210705.1_Tcal_SD_v2.1 invertebrate Tigriopus_californicus +./runBuild GCA_007224835.1_ASM722483v1 fish Danionella_translucida ./runBuild GCA_007364235.1_fArcCen1_v1.h fish Archocentrus_centrarchus ./runBuild GCA_007364275.2_fArcCen1 vertebrate Archocentrus_centrarchus ./runBuild GCA_007399395.1_rGopEvg1_v1.alt vertebrate Gopherus_evgoodei ./runBuild GCA_007474575.1_mLynCan4_v1.alt mammals Lynx_canadensis ./runBuild GCA_007474575.2_mLynCan4.alt.v2 mammals Lynx_canadensis ./runBuild GCA_007726485.1_CERZOS_EC1.0 plants Eragrostis_curvula ./runBuild GCA_007844835.1_NRC_Mithun_1 mammals Bos_frontalis ./runBuild GCA_007922615.2_ASM792261v2 bacteria Nitratireductor_sp._SY7 ./runBuild GCA_007989325.2_ASM798932v2 invertebrate Drosophila_virilis ./runBuild GCA_008131255.1_ASM813125v1 mammals Meriones_unguiculatus ./runBuild GCA_008658355.1_bAlcTor1_alternate birds Alca_torda ./runBuild GCA_008658365.1_bAlcTor1_primary birds Alca_torda ./runBuild GCA_008658375.1_mBalMus1_alternate mammals Balaenoptera_musculus ./runBuild GCA_008658375.2_mBalMus1.alt.v2 mammals Balaenoptera_musculus ./runBuild GCA_008692045.1_mPhoSin1.alt mammals Phocoena_sinus @@ -607,30 +608,31 @@ ./runBuild GCA_017976315.1_fCheRos1.alt fish Chelmon_rostratus ./runBuild GCA_017976375.1_bCucCan1.pri birds Cuculus_canorus ./runBuild GCA_018104305.1_AalbF3 invertebrate Aedes_albopictus ./runBuild GCA_018139145.1_ASM1813914v1 birds Gymnogyps_californianus ./runBuild GCA_018296145.1_Otsh_v2.0 fish Oncorhynchus_tshawytscha ./runBuild GCA_018400075.1_ASM1840007v1 fish Danio_rerio ./runBuild GCA_018466835.1_HG02257.alt.pat.f1_v2 primates Homo_sapiens ./runBuild GCA_018466845.1_HG02257.pri.mat.f1_v2 primates Homo_sapiens ./runBuild GCA_018466855.1_HG02559.alt.pat.f1_v2 primates Homo_sapiens ./runBuild GCA_018466985.1_HG02559.pri.mat.f1_v2 primates Homo_sapiens ./runBuild GCA_018467015.1_HG02486.pri.mat.f1_v2 primates Homo_sapiens ./runBuild GCA_018467155.1_HG01891.pri.mat.f1_v2 primates Homo_sapiens ./runBuild GCA_018467165.1_HG01891.alt.pat.f1_v2 primates Homo_sapiens ./runBuild GCA_018469405.1_HG01258.pri.mat.f1_v2 primates Homo_sapiens ./runBuild GCA_018469415.1_HG03516.alt.pat.f1_v2 primates Homo_sapiens +./runBuild GCA_018469425.1_HG03516.pri.mat.f1_v2 primates Homo_sapiens ./runBuild GCA_018469665.1_HG01123.pri.mat.f1_v2.1 primates Homo_sapiens ./runBuild GCA_018469675.1_HG01258.alt.pat.f1_v2 primates Homo_sapiens ./runBuild GCA_018469685.1_HG01361.pri.mat.f1_v2 primates Homo_sapiens ./runBuild GCA_018469695.1_HG01123.alt.pat.f1_v2.1 primates Homo_sapiens ./runBuild GCA_018469705.1_HG01361.alt.pat.f1_v2 primates Homo_sapiens ./runBuild GCA_018469865.1_HG01358.pri.mat.f1_v2.1 primates Homo_sapiens ./runBuild GCA_018469925.1_HG02622.alt.pat.f1_v2 primates Homo_sapiens ./runBuild GCA_018469935.1_HG02717.pri.mat.f1_v2 primates Homo_sapiens ./runBuild GCA_018469945.1_HG02630.alt.pat.f1_v2 primates Homo_sapiens ./runBuild GCA_018469955.1_HG02630.pri.mat.f1_v2 primates Homo_sapiens ./runBuild GCA_018469965.1_HG01358.alt.pat.f1_v2.1 primates Homo_sapiens ./runBuild GCA_018470425.1_HG02717.alt.pat.f1_v2 primates Homo_sapiens ./runBuild GCA_018471085.1_HG01175.pri.mat.f1_v2 primates Homo_sapiens ./runBuild GCA_018471345.1_HG01106.pri.mat.f1_v2 primates Homo_sapiens ./runBuild GCA_018471545.1_HG01952.pri.mat.f1_v2 primates Homo_sapiens @@ -809,49 +811,51 @@ ./runBuild GCA_901699155.2_bStrTur1.2 birds Streptopelia_turtur ./runBuild GCA_901699165.1_bStrTur1.1_alternate_haplotype birds Streptopelia_turtur ./runBuild GCA_901699165.2_bStrTur1.2_alternate_haplotype birds Streptopelia_turtur ./runBuild GCA_901709675.1_fSynAcu1.1 fish Syngnathus_acus ./runBuild GCA_901709685.1_fSynAcu1.1_alternate_haplotype fish Syngnathus_acus ./runBuild GCA_901765105.1_aMicUni1.1_alternate_haplotype vertebrate Microcaecilia_unicolor ./runBuild GCA_901765185.1_JU765_v2 invertebrate Panagrolaimus_sp._JU765 ./runBuild GCA_901765195.1_PS1159_v2 invertebrate Panagrolaimus_sp._PS1159 ./runBuild GCA_901779485.1_PS1579_v2 invertebrate Panagrolaimus_sp._PS1579 ./runBuild GCA_902148815.1_fMyrMur1.1_alternate_haplotype fish Myripristis_murdjan ./runBuild GCA_902148825.1_fSphaOr1.1_alternate_haplotype fish Sphaeramia_orbicularis ./runBuild GCA_902148835.1_fSalaFa1.1_alternate_haplotype fish Salarias_fasciatus ./runBuild GCA_902153765.1_bAquChr1.2_alternate_haplotype birds Aquila_chrysaetos_chrysaetos ./runBuild GCA_902153765.2_bAquChr1.4_alternate_haplotype birds Aquila_chrysaetos_chrysaetos ./runBuild GCA_902167395.1_gadMor3.0_alternate_haplotype fish Gadus_morhua +./runBuild GCA_902168055.1_ARATINGA-SOLSTITIALIS-ASSEMBLY-PRJEB33153 birds Aratinga_solstitialis ./runBuild GCA_902362175.1_fChaCha1.1_alternate_haplotype fish Chanos_chanos ./runBuild GCA_902459445.1_eAstRub1.2_alternate_haplotype vertebrate Asterias_rubens ./runBuild GCA_902459495.1_aGeoSer1.1_alternate_haplotype vertebrate Geotrypetes_seraphini ./runBuild GCA_902459505.1_aGeoSer1.1 vertebrate Geotrypetes_seraphini ./runBuild GCA_902500245.1_fThaAma1.1_alternate_haplotype fish Thalassophryne_amazonica ./runBuild GCA_902500255.1_fThaAma1.1 fish Thalassophryne_amazonica ./runBuild GCA_902685485.1_mSciVul1.1_alternate_haplotype mammals Sciurus_vulgaris ./runBuild GCA_902686455.1_mSciVul1.1 mammals Sciurus_vulgaris ./runBuild GCA_902713425.1_fAciRut3.1_maternal_haplotype vertebrate Acipenser_ruthenus ./runBuild GCA_902713435.1_fAciRut3.1_paternal_haplotype vertebrate Acipenser_ruthenus ./runBuild GCA_902713435.2_fAciRut3.2_paternal_haplotype vertebrate Acipenser_ruthenus ./runBuild GCA_902728005.1_Acinetobacter_baumannii_ATCC17978 bacteria Acinetobacter_baumannii_ATCC_17978 ./runBuild GCA_902806625.1_Camarhynchus_parvulus_V1.1 birds Camarhynchus_parvulus ./runBuild GCA_902806635.1_CM05836_v1.1 plants Digitaria_exilis ./runBuild GCA_902829235.1_CLODIP2 invertebrate Cloeon_dipterum ./runBuild GCA_903684855.2_fDreTuH1.2 fish Danio_rerio ./runBuild GCA_903684865.1_fDreABH1.1 fish Danio_rerio ./runBuild GCA_903797565.2_bEriRub2.2_alternate_haplotype birds Erithacus_rubecula ./runBuild GCA_903797595.2_bEriRub2.2 birds Erithacus_rubecula +./runBuild GCA_903798025.1_fDanTra1.1 fish Danionella_translucida ./runBuild GCA_903992545.1_mPipPip1.1 mammals Pipistrellus_pipistrellus ./runBuild GCA_904848175.1_fAcaLat1.1_alternate_haplotype fish Acanthopagrus_latus ./runBuild GCA_904849725.1_MorexV3_pseudomolecules_assembly plants Hordeum_vulgare ./runBuild GCA_905067065.1_Zm-LH244-REFERENCE-BAYER-1.0 plants Zea_mays ./runBuild GCA_905146925.1_ilAutGamm1.1 invertebrate Autographa_gamma ./runBuild GCA_905147015.1_ilLasFlex1.1 invertebrate Laspeyria_flexula ./runBuild GCA_905147045.1_ilAglIoxx1.1 invertebrate Nymphalis_io ./runBuild GCA_905147105.1_ilPieBrab1.1 invertebrate Pieris_brassicae ./runBuild GCA_905147135.1_ilBlaLact1.1 invertebrate Blastobasis_lacticolella ./runBuild GCA_905147175.1_ilAglUrti1.1 invertebrate Nymphalis_urticae ./runBuild GCA_905147225.1_ilEupSimi1.1 invertebrate Euproctis_similis ./runBuild GCA_905147235.1_ilEryTage1.1 invertebrate Erynnis_tages ./runBuild GCA_905147285.1_ilHypProb1.1 invertebrate Hypena_proboscidalis ./runBuild GCA_905147325.1_ilNotDrom1.1 invertebrate Notodonta_dromedarius ./runBuild GCA_905147345.1_ilMytImpu1.1 invertebrate Mythimna_impura