52e73de9b2a157e02e07eaecaba957ce2ce579d2 hiram Mon Mar 27 10:05:00 2023 -0700 HPRC almost done refs #30508 diff --git src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv index 2724642..a90c013 100644 --- src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv +++ src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv @@ -1,97 +1,110 @@ GCF_000951035.1_Cang.pa_1.0 Angolan colobus GCA_004027145.1_DauMad_v1_BIUU aye-aye GCA_004363605.1_IndInd_v1_BIUU babakoto GCF_001698545.2_ASM169854v2 black snub-nosed monkey (Rb0 v2 refseq 2016) GCA_004024785.1_AteGeo_v1_BIUU black-handed spider monkey GCA_004027715.1_CalDon_v1_BIUU Bolivian titi GCF_016699345.2_BCM_Sbol_2.1 Bolivian squirrel monkey (100643 v2.1 BCM 2021) GCA_004027275.1_EulFul_v1_BIUU brown lemur GCF_002880755.1_Clint_PTRv2 chimpanzee GCA_004024645.1_MizCoq_v1_BIUU Coquerel's mouse lemur GCF_000956105.1_Pcoq_1.0 Coquerel's sifaka 6110/Marcella (2015 refseq) GCA_011100615.1_Macaca_fascicularis_6.0 crab-eating macaque (2020 cy0333) GCF_012559485.2_MFA1912RKSv2 crab-eating macaque CE1976F Keio U/RIKEN 2021 GCA_004027615.1_CertNeg_v1_BIUU De Brazza's monkey GCF_000951045.1_Mleu.le_1.0 drill GCF_009764315.1_Tfra_2.0 Francois's langur GCF_003255815.1_Tgel_1.0 gelada GCF_007565055.1_ASM756505v1 golden snub-nosed monkey (2019 Northwest U) GCF_000165445.2_Mmur_3.0 gray mouse lemur GCF_000409795.2_Chlorocebus_sabeus_1.1 green monkey 1994-021 (2014 refseq) GCF_015252025.1_Vero_WHO_p1.0 green monkey WHO RCB 10-87 GCA_004025065.1_SemEnt_v1_BIUU Hanuman langur GCA_021951015.1_HG002.mat.cur.20211005 human (HG002.mat 2022) GCA_021950905.1_HG002.pat.cur.20211005 human (HG002.pat 2022) GCA_018471345.1_HG01106.pri.mat.f1_v2 human (HG01106.mat 2021) GCA_018504365.1_HG01109.pri.mat.f1_v2 human (HG01109.mat 2021) GCA_018469665.1_HG01123.pri.mat.f1_v2.1 human (HG01123.mat 2021) GCA_018469695.1_HG01123.alt.pat.f1_v2.1 human (HG01123.pat 2021) GCA_018471085.1_HG01175.pri.mat.f1_v2 human (HG01175.mat 2021) GCA_018504045.1_HG01243.alt.pat.f1_v2 human (HG01243.pat 2021) GCA_018469405.1_HG01258.pri.mat.f1_v2 human (HG01258.mat 2021) GCA_018469675.1_HG01258.alt.pat.f1_v2 human (HG01258.pat 2021) GCA_018469865.1_HG01358.pri.mat.f1_v2.1 human (HG01358.mat 2021) GCA_018469965.1_HG01358.alt.pat.f1_v2.1 human (HG01358.pat 2021) GCA_018469685.1_HG01361.pri.mat.f1_v2 human (HG01361.mat 2021) GCA_018469705.1_HG01361.alt.pat.f1_v2 human (HG01361.pat 2021) GCA_018467155.1_HG01891.pri.mat.f1_v2 human (HG01891.mat 2021) GCA_018467165.1_HG01891.alt.pat.f1_v2 human (HG01891.pat 2021) GCA_018472705.1_HG01928.alt.pat.f1_v2 human (HG01928.pat 2021) GCA_018471545.1_HG01952.pri.mat.f1_v2 human (HG01952.mat 2021) GCA_018472845.1_HG01978.alt.pat.f1_v2 human (HG01978.pat 2021) GCA_018505855.1_HG02055.alt.pat.f1_v2 human (HG02055.pat 2021) GCA_018504085.1_HG02080.pri.mat.f1_v2 human (HG02080.mat 2021) GCA_018504055.1_HG02080.alt.pat.f1_v2 human (HG02080.pat 2021) GCA_018505825.1_HG02109.pri.mat.f1_v2 human (HG02109.mat 2021) GCA_018852585.1_HG02145.pri.mat.f1_v2 human (HG02145.mat 2021) GCA_018852595.1_HG02145.alt.pat.f1_v2 human (HG02145.pat 2021) GCA_018466845.1_HG02257.pri.mat.f1_v2 human (HG02257.mat 2021) GCA_018466835.1_HG02257.alt.pat.f1_v2 human (HG02257.pat 2021) GCA_018467015.1_HG02486.pri.mat.f1_v2 human (HG02486.mat 2021) GCA_018466985.1_HG02559.pri.mat.f1_v2 human (HG02559.mat 2021) GCA_018466855.1_HG02559.alt.pat.f1_v2 human (HG02559.pat 2021) GCA_018469925.1_HG02622.alt.pat.f1_v2 human (HG02622.pat 2021) GCA_018469945.1_HG02630.alt.pat.f1_v2 human (HG02630.pat 2021) GCA_018469955.1_HG02630.pri.mat.f1_v2 human (HG02630.mat 2021) GCA_018469935.1_HG02717.pri.mat.f1_v2 human (HG02717.mat 2021) GCA_018470425.1_HG02717.alt.pat.f1_v2 human (HG02717.pat 2021) GCA_018503575.1_HG02818.alt.pat.f1_v2 human (HG02818.pat 2021) GCA_018504065.1_HG02723.pri.mat.f1_v2 human (HG02723.mat 2021) GCA_018469425.1_HG03516.pri.mat.f1_v2 human (HG03516.mat 2021) GCA_018469415.1_HG03516.alt.pat.f1_v2 human (HG03516.pat 2021) GCA_018852605.1_HG002.alt.pat.f1_v2 human (NA24385.pat 2021) GCA_018506965.1_HG005.pri.mat.f1_v2 human (NA24631.mat 2021) GCA_016700455.2_mHomSap3.pat human (WGS:JACSEW01 2021 VGP alt pseudohaplotype) GCA_016695395.2_mHomSap3.mat human (WGS:JACSEX01 2021 VGP) GCA_004024725.1_CheMed_v1_BIUU lesser dwarf lemur GCF_000952055.2_Anan_2.0 Ma's night monkey GCA_004027835.1_AloPal_v1_BIUU mantled howler monkey GCF_006542625.1_Asia_NLE_v1 northern white-cheeked gibbon (2019 U. Washington) GCF_008728515.1_Panubis1.0 olive baboon (2019 UCSF) GCF_001604975.1_Cebus_imitator-1.0 Panamanian white-faced capuchin GCF_024542745.1_ASM2454274v1 Pere David's macaque GCF_000164805.1_Tarsius_syrichta-2.0.1 Philippine tarsier GCF_000956065.1_Mnem_1.0 pig-tailed macaque GCA_004027105.1_NasLar_v1_BIUU proboscis monkey GCF_000258655.2_panpan1.1 pygmy chimpanzee (Ulindi refseq 2015) GCF_013052645.1_Mhudiblu_PPA_v0 pygmy chimpanzee (Mhudiblu) GCA_004027335.1_EryPat_v1_BIUU red guenon GCA_004024825.1_PygNem_v1_BIUU red shanked douc langur GCF_003339765.1_Mmul_10 Rhesus monkey (2019 U. Washington) GCF_020740605.2_mLemCat1.pri ring-tailed lemur (2021 VGP) GCA_001262665.1_Eflavifronsk33QCA Sclater's lemur (Harlow 2015) GCF_009828535.2_HMol_V2 silvery gibbon (HMO894 2020 UC Santa Cruz) GCF_027406575.1_mNycCou1.pri slow loris (mNycCou1 primary hap 2022) GCF_000181295.1_OtoGar3 small-eared galago GCF_000955945.1_Caty_1.0 sooty mangabey GCF_002880775.1_Susie_PABv2 Sumatran orangutan (2018 refseq) GCA_004024885.1_SagImp_v1_BIUU tamarin GCF_009761245.1_GSC_monkey_1.0 tufted capuchin GCF_002776525.5_ASM277652v5 Ugandan red Colobus (RC106 v5 2019) GCF_008122165.1_Kamilah_GGO_v0 western lowland gorilla (Kamilah 2019) GCA_004026645.1_PitPit_v1_BIUU white-faced saki GCA_004027755.1_CebAlb_v1_BIUU white-fronted capuchin GCF_009663435.1_Callithrix_jacchus_cj1700_1.1 white-tufted-ear marmoset (cj1700 2020) GCA_011078405.1_mCalJac1.mat white-tufted-ear marmoset (maternal 2020 VGP) GCA_011100535.1_mCalJac1.pat white-tufted-ear marmoset (paternal 2020 VGP) GCA_011100555.1_mCalJac1.pat.X white-tufted-ear marmoset (paternal X 2020 VGP) +GCA_018472865.1_HG01978.pri.mat.f1_v2 human (HG01978.mat 2021) +GCA_018503585.1_HG02818.pri.mat.f1_v2 human (HG02818.mat 2021) +GCA_018470455.1_HG02886.pri.mat.f1_v2 human (HG02886.mat 2021) +GCA_018503245.1_HG03486.alt.pat.f1_v2 human (HG03486.pat 2021) +GCA_018505845.1_HG03492.pri.mat.f1_v2 human (HG03492.mat 2021) +GCA_018473295.1_HG03540.pri.mat.f1_v2 human (HG03540.mat 2021) +GCA_018473315.1_HG03540.alt.pat.f1_v2 human (HG03540.pat 2021) +GCA_018503255.1_NA18906.pri.mat.f1_v2 human (NA18906.mat 2021) +GCA_018503285.1_NA18906.alt.pat.f1_v2 human (NA18906.pat 2021) +GCA_018503275.1_NA19240.pri.mat.f1_v2 human (NA19240.mat 2021) +GCA_018503265.1_NA19240.alt.pat.f1_v2 human (NA19240.pat 2021) +GCA_018504635.1_NA20129.pri.mat.f1_v2 human (NA20129.mat 2021) +GCA_018504665.1_NA21309.alt.pat.f1_v2 human (NA21309.pat 2021)