dab0d2ab7319f42388fbd2d4df014e7234ef906d max Thu Mar 23 04:26:30 2023 -0700 Preview2 week - bugs introduced now will need a build patch to fix Consider commiting next week diff --git README README index 7e3d71b..1604679 100644 --- README +++ README @@ -1,96 +1,96 @@ CONTENTS AND COPYRIGHT This directory contains the entire source tree for the -UCSC Genome Bioinformatics Group's suite of biological analysis +UCSC Genome Browser Group's suite of biological analysis and web display programs as well as some of Jim Kent's own tools. All files are copyrighted, but license is hereby granted for personal, academic, and non-profit use. Please see the LICENSE file in the current directory for more details, the license differs by directory. -If you want only the MIT-license parts of the code (libraries and command -line tools, e.g. for package managers and pipelines), have a look at +If you want only the MIT-licensed parts of the code (libraries and command +line tools, e.g. for use in package managers and pipelines), have a look at https://github.com/ucscGenomeBrowser/kent-core Commercial users interested in the UCSC Genome Browser please see http://genome.ucsc.edu/license/. https://genome-store.ucsc.edu/ Commercial users interested in BLAT, gfServer, isPCR and related tools should contact http://www.kentinformatics.com/ for access If you want to run a local installation of the UCSC Genome Browser (we call this a mirror, even when it includes only a small part of the data), you do not need the whole source tree. We provide statically compiled binary CGI-bin executables, the apache htdocs folder, binary MySQL databases and ancillary large data files in /gbdb via an Rsync download server. For install details see http://genome.ucsc.edu/admin/mirror.html The pre-compiled user application binaries may function on your system without this build procedure. For example to obtain the linux.x86_64 binaries: rsync -azvP rsync://hgdownload.soe.ucsc.edu/genome/admin/exe/linux.x86_64/ ./ Mac OSX binaries available via: rsync -azvP rsync://hgdownload.soe.ucsc.edu/genome/admin/exe/macOSX.x86_64/ ./ If you are looking for only the MIT licensed, minimal part of the source code to build the command line tools, e.g. for pipelines and package managers, see this code repository: https://github.com/ucscGenomeBrowser/kent-core Most source code users will only be interested in the kent/src/inc and kent/src/lib directories, which contain the interfaces and implementations to the library routines, and in a few specific applications. The applications are scattered in other directories. Many of them are web based. The UCSC Genome Browser in particular is mostly found in kent/src/hg/hgTracks. The current version number is stored in src/hg/inc/versionInfo.h . The current version of a running genome browser is displayed in the html tag