dab0d2ab7319f42388fbd2d4df014e7234ef906d
max
  Thu Mar 23 04:26:30 2023 -0700
Preview2 week - bugs introduced now will need a build patch to fix
Consider commiting next week

diff --git README README
index 7e3d71b..1604679 100644
--- README
+++ README
@@ -1,96 +1,96 @@
 CONTENTS AND COPYRIGHT
 
 This directory contains the entire source tree for the
-UCSC Genome Bioinformatics Group's suite of biological analysis
+UCSC Genome Browser Group's suite of biological analysis
 and web display programs as well as some of Jim Kent's own tools.
 All files are copyrighted, but license is hereby granted for personal,
 academic, and non-profit use. Please see the LICENSE file in the
 current directory for more details, the license differs by directory.
-If you want only the MIT-license parts of the code (libraries and command
-line tools, e.g. for package managers and pipelines), have a look at
+If you want only the MIT-licensed parts of the code (libraries and command
+line tools, e.g. for use in package managers and pipelines), have a look at
 https://github.com/ucscGenomeBrowser/kent-core
 
 Commercial users interested in the UCSC Genome Browser please see
     http://genome.ucsc.edu/license/.
     https://genome-store.ucsc.edu/
 Commercial users interested in BLAT, gfServer, isPCR and related tools should
 contact http://www.kentinformatics.com/ for access
 
 If you want to run a local installation of the UCSC Genome Browser
 (we call this a mirror, even when it includes only a small
 part of the data), you do not need the whole source tree. We provide
 statically compiled binary CGI-bin executables, the apache htdocs folder,
 binary MySQL databases and ancillary large data files in /gbdb via an Rsync
 download server.  For install details see
     http://genome.ucsc.edu/admin/mirror.html
 
 The pre-compiled user application binaries may function on your system
 without this build procedure.  For example to obtain the
 linux.x86_64 binaries:
  rsync -azvP rsync://hgdownload.soe.ucsc.edu/genome/admin/exe/linux.x86_64/ ./
 
 Mac OSX binaries available via:
  rsync -azvP rsync://hgdownload.soe.ucsc.edu/genome/admin/exe/macOSX.x86_64/ ./
 
 If you are looking for only the MIT licensed, minimal part of the source code
 to build the command line tools, e.g. for pipelines and package managers, see
 this code repository: https://github.com/ucscGenomeBrowser/kent-core
  
 Most source code users will only be interested in the kent/src/inc and
 kent/src/lib directories, which contain the interfaces and implementations
 to the library routines,  and in a few specific applications.
 The applications are scattered in other directories.  Many of them are web based.
 The UCSC Genome Browser in particular is mostly found in kent/src/hg/hgTracks.
 
 The current version number is stored in src/hg/inc/versionInfo.h .
 The current version of a running genome browser is displayed in the html
 tag <TITLE> by the hgTracks program, e.g. http://genome.ucsc.edu/cgi-bin/hgTracks, 
 in modern internet browsers, hover over a tab to show it.
 
 GENERAL INSTALL INSTRUCTIONS
 
 1. Get the code.  The best way to do this now for
    Unix users is via Git following the instructions at:
      http://genome.ucsc.edu/admin/git.html
    Or, fetch the entire source in a single file:
      rsync -azvP rsync://hgdownload.soe.ucsc.edu/genome/admin/jksrc.zip ./
      or:
      wget --timestamping http://hgdownload.soe.ucsc.edu/admin/jksrc.zip
    The unzip result from that file will establish a directory hierarchy:
      ./kent/...
 
 2. Run make:
 
      cd src
      make utils
 
    Usually, the locations of the required libraries on your system are auto-detected.
 
 SEE ALSO: http://hgdownload.soe.ucsc.edu/downloads.html#source_downloads
           https://genome-store.ucsc.edu/
           http://genome.ucsc.edu/goldenPath/help/mirror.html#manual-installation-instructions
           http://genome.ucsc.edu/goldenPath/help/mirrorManual.html#building-the-kent-source-tree
 
 INSTALL INSTRUCTIONS FOR BLAT
 
 1. Follow the general install instructions above.
 3. Execute make in each of the following directories:
      kent/src/gfServer
      kent/src/gfClient
      kent/src/blat
      kent/src/utils/faToNib
 
 INSTALL INSTRUCTIONS FOR A LOCAL GENOME BROWSER MIRROR (a mirror can have only some assemblies)
 
    In most cases, you will not need to modify the source code to install a
    Genome Browser webserver locally.
 
    Overview https://genome.ucsc.edu/goldenPath/help/mirror.html
    Manual installation https://genome.ucsc.edu/goldenPath/help/mirrorManual.html
    TrackDb documentation https://genome.ucsc.edu/goldenPath/help/trackDb/trackDbHub.html
    Rare TrackDb statements kent/src/hg/makeDb/trackDb/README
 
    There are numerous README files in the source tree describing
    functions or modules in that area of the source tree.
    The kent/src/README in particular should be read by anyone modifying
    the C source code.