7bac7ad656d887ac590f13743461a5e676dbb89f max Fri Apr 21 02:43:57 2023 -0700 doc fixes around bigDataIndex, no redmine, galaxy ticket with Jennifer Jackson, see https://help.galaxyproject.org/t/send-files-from-galaxy-to-ucscs-eu-mirror/9921/3 diff --git src/hg/htdocs/goldenPath/help/hgTracksHelp.html src/hg/htdocs/goldenPath/help/hgTracksHelp.html index df7c4cf..75b4549 100755 --- src/hg/htdocs/goldenPath/help/hgTracksHelp.html +++ src/hg/htdocs/goldenPath/help/hgTracksHelp.html @@ -471,46 +471,49 @@ <p> The track display controls are grouped into categories that reflect the type of data in the track, e.g., Gene Prediction Tracks, mRNA and EST tracks, etc. To change the display mode for a track, find the track's controller in the Track Controls section at the bottom of the Genome Browser page, select the desired mode from the control's display menu, and then click the <em>refresh</em> button. Alternatively, you can change the display mode by using the Genome Browser's <a href="#RIGHT_CLICK_NAV">right-click navigation</a> feature, or can toggle between dense and full modes for a displayed track (or pack mode when available) by clicking on the optional center label for the track.</p> <a name="duplicate"></a> <h3>Duplicating a track</h3> <p> Tracks that are not inside of composite or supertracks can be duplicated to allow for independent track settings for a track. To duplicate a track, go to the track settings page for the track and -there will be a link, "Duplicate track". Clicking the link will take you to the new track +there will be a link, "Duplicate track", next to the Display mode setting:</p> +<p class="text-center"><img src="/images/duplicateDisplay.png"></p> +<p> +Clicking the link will take you to the new track settings page for the duplicate track with the additional text, "copy #2". This number will increment by one for each additional copy of the track. After creating the copy, a -"Remove track" link will also appear on the track settings page for when you wish to -remove the duplicated track.</p> +"Remove duplicate" link will also appear on the track settings page for when you wish to +remove the duplicated track. As an example, duplicating the GENCODE track on hg38 allows users to +have two tracks, one in 'pack' mode and a second track in 'full' mode as a 'density graph'.</p> <div class="row"> <div class="col-md-6"> <p class="text-center"><img src="/images/duplicateTrackUi.png" width="550px"></p> </div> <div class="col-md-6"> <p class="text-center"><img src="/images/removeDuplicateTrackUi.png" width="550px"></p> </div> </div> <p> -As an example, duplicating the GENCODE track on hg38 allows users to have two tracks, one in 'pack' -mode and a second track in 'full' mode as a 'density graph'. Each copy of the track will have it's + Each copy of the track will have it's own independent settings to allow for multiple display views without having to revert back to an alternate view for the dataset.</p> <p class="text-center"> <img src="/images/duplicationHgTracks.png" width="800px"> </p> <h3>Changing the display mode for a group of tracks</h3> <p> Track display modes may be set individually or as a group on the Genome Browser Track Configuration page. To access the configuration page, click the <em>configure</em> button on the annotation tracks page or the <em>configure tracks and display</em> button on the Gateway page. Exercise caution when using the <em>show all</em> buttons on track groups or assemblies that contain a large number tracks; this may seriously impact the display performance of the Genome Browser or cause your Internet browser to time out.</p>