Commits for braney

v446_base to v447_preview (2023-04-03 to 2023-04-10) v447

3dbf5323c70384a8a0b4f9004cfe3485b4d57342 Mon Apr 3 12:19:25 2023 -0700

• don't create the squishy track in squishyPack mode if it's going to be empty.
  • src/hg/hgTracks/hgTracks.c - lines changed 5, context: html, text, full: html, text

d4424ec80aa5d9a43bce853331da08932a7c4e94 Tue Apr 4 10:02:40 2023 -0700

• fix hgvsTest
  • src/hg/lib/tests/expected/hgvs/validTerms.txt - lines changed 2, context: html, text, full: html, text
  • src/hg/lib/tests/input/hgvs/validTerms.txt - lines changed 1, context: html, text, full: html, text

4d2eb49f84199890ac7e679ba67f094cb49bd124 Thu Apr 6 14:29:02 2023 -0700

• Change recommended track sets to merge with the current session. refs #28525
  • src/hg/hgSession/hgSession.c - lines changed 4, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.c - lines changed 55, context: html, text, full: html, text
  • src/hg/hgTracks/recTrackSets.c - lines changed 16, context: html, text, full: html, text
  • src/hg/inc/cart.h - lines changed 7, context: html, text, full: html, text
  • src/hg/lib/cart.c - lines changed 45, context: html, text, full: html, text

13c0977119e845ccce3568a58a8c5d0c22093565 Thu Apr 6 14:31:15 2023 -0700

• spme tests for making a tool that scrubs recommended track sets refs #28525
  • src/hg/utils/rts/dumpSessions - lines changed 2, context: html, text, full: html, text
  • src/hg/utils/rts/fixSessions - lines changed 11, context: html, text, full: html, text
  • src/hg/utils/rts/loadSessions - lines changed 14, context: html, text, full: html, text
  • src/hg/utils/rts/verboten.lst - lines changed 6, context: html, text, full: html, text

f8d8ca673a50a4c0870e011d9d208cd85112bf89 Fri Apr 7 11:30:30 2023 -0700

• some small tweaks to the recommended track set code (don't hide tracks that are hidden in the current session if they're specifically turned on in the RTS)
  • src/hg/hgTracks/recTrackSets.c - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/lib/cart.c - lines changed 16, context: html, text, full: html, text

510ec86d77710a8670b5276a8eea40f3d6ab74cc Fri Apr 7 12:16:08 2023 -0700

• tweak bigChain support to work with snakes. Change UI option to use the words "rearrangement graph" instead of snake
  • src/hg/hgTracks/chainTrack.c - lines changed 2, context: html, text, full: html, text
  • src/hg/lib/hui.c - lines changed 5, context: html, text, full: html, text

2be85c9badc07c275552f8af45543b8ae6fb7cc0 Sat Apr 8 15:53:11 2023 -0700

• new merge recommended track set tech is (once again) under hg.conf control
  • src/hg/hgTracks/hgTracks.c - lines changed 2, context: html, text, full: html, text
  • src/hg/hgTracks/recTrackSets.c - lines changed 18, context: html, text, full: html, text