0c7fee255303c1f274b1133ae232d73d14478021
lrnassar
  Fri Apr 7 14:20:49 2023 -0700
Staging the new DGV gold track and adding a mouseOvers to other DGV tracks, refs #30908, #30909

diff --git src/hg/makeDb/doc/hg38/variation.txt src/hg/makeDb/doc/hg38/variation.txt
index 5f7b490..28f5c86 100644
--- src/hg/makeDb/doc/hg38/variation.txt
+++ src/hg/makeDb/doc/hg38/variation.txt
@@ -1959,15 +1959,25 @@
     SNP: 4565394
     INDEL: 593052
     output/NA19240_Y117_YRI
     SNP: 5954728
     INDEL: 728480
     output/NA19675_m004_MXL
     SNP: 4763107
     INDEL: 619293
     output/NA19685_m011_MXL
     SNP: 4758396
     INDEL: 619294
 
 ##############################################################################
 # Trios for Genome In a Bottle - DONE 08/04/2020 ChrisL
 # see ~/kent/src/hg/makeDb/giab/make.txt
+
+##############################################################################
+# DGV gold - DONE 04/07/2023 Lou
+
+    mkdir /hive/data/genomes/hg38/bed/dgv/dgvGold
+    cd /hive/data/genomes/hg38/bed/dgv/dgvGold
+    wget http://dgv.tcag.ca/dgv/docs/DGV.GS.hg38.gff3
+    ~/kent/src/hg/utils/automation/translateDgvGold.py DGV.GS.hg38.gff3 | sort -k1,1 -k2,2n | uniq > /hive/data/genomes/hg38/bed/dgv/dgvGold/dgvGold.bed12
+    bedToBigBed -type=bed12+17 -as=/hive/data/genomes/hg19/bed/dgv/190506/dgvGold.as -tab -extraIndex=name dgvGold.bed12 /hive/data/genomes/hg38/chrom.sizes dgvGold.bb
+    ln -s /hive/data/genomes/hg38/bed/dgv/dgvGold/dgvGold.bb /gbdb/hg38/dgv/