Commits for hiram

137792ebd8921e7f933dfba90966d5c1d7cd3ea4 Mon Apr 10 10:48:25 2023 -0700

per user request GCA_921998555.2_129S1_SvImJ_v3 for a liftOver refs #31040
- src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 1, context: html, text, full: html, text

a7290f420163ec189215bb563368993282050de7 Mon Apr 10 10:50:10 2023 -0700

per user request GCA_921998555.2_129S1_SvImJ_v3 for a liftOver refs #31040
- src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv - lines changed 2, context: html, text, full: html, text

edbba2de34acf9063eed1399e6c28bbe8f91ec88 Mon Apr 10 11:52:32 2023 -0700

do not need the pipelineFree after the pipelineClose already done refs #23589
- src/hg/hubApi/list.c - lines changed 1, context: html, text, full: html, text

d3a29443ea8bdc441a131bfd1b8390da40a3a2b1 Mon Apr 10 17:09:21 2023 -0700

trying out the display of all 96 HPRC genomes + T2T refs #30508
- src/hg/makeDb/trackDb/human/chainNetHuman.ra - lines changed 6432, context: html, text, full: html, text

f32eaf0fbacb8a8c500dc002f68d73166067143e Tue Apr 11 10:44:37 2023 -0700

all liftOver tracks now available for HPRC on hg38 refs #30508
- src/hg/makeDb/trackDb/human/chainNetHuman.ra - lines changed 1758, context: html, text, full: html, text

39b70f7f9425b87eb06dc521f2579abf86d877b6 Wed Apr 12 09:13:06 2023 -0700

calculating coverage on hg38 of HPRC lift.over chains refs #30508
- src/hg/makeDb/doc/hg38/hprcCoverage.txt - lines changed 196, context: html, text, full: html, text

2cad1d6b9819c8a3e4e1913dcddc5de72b338f58 Wed Apr 12 21:12:22 2023 -0700

5 different tracks for coverage to indicate the five different coverage brackets refs #30508
- src/hg/makeDb/trackDb/human/hg38/hprcCoverage.ra - lines changed 65, context: html, text, full: html, text

88acb2c4456b3246f76cf33f4a1d1591edc045ba Wed Apr 12 21:15:54 2023 -0700

5 different tracks for coverage to indicate the five different coverage brackets refs #30508
- src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 1, context: html, text, full: html, text

cc5e3c90e84384bb7afc43f35cfa1177e8e5975e Thu Apr 13 13:47:45 2023 -0700

add in the T2T-CHM13v2.0 chains nets refs #30508
- src/hg/makeDb/trackDb/human/chainNetHuman.ra - lines changed 93, context: html, text, full: html, text