Commits for braney

v448_preview2 to v448_base (2023-05-08 to 2023-05-15) v448

50d5df2a88178ea49caa2fd1b41ce28af84f219f Mon May 8 12:36:08 2023 -0700

• support bigMaf for sequence logos
  • src/hg/hgTracks/bigWigTrack.c - lines changed 3, context: html, text, full: html, text
  • src/hg/hgTracks/wigCommon.h - lines changed 3, context: html, text, full: html, text
  • src/hg/hgTracks/wigTrack.c - lines changed 29, context: html, text, full: html, text
  • src/hg/inc/hgMaf.h - lines changed 20, context: html, text, full: html, text
  • src/hg/lib/hgMaf.c - lines changed 78, context: html, text, full: html, text

dd5f85728132bc8354dd2afff00d4d6ae31fe183 Mon May 8 12:42:35 2023 -0700

• turn on sequence logo for 470 way
  • src/hg/makeDb/trackDb/human/hg38/trackDb.470way.ra - lines changed 1, context: html, text, full: html, text

75086be0f5ee3638664a7993b1a4510272bd1a55 Fri May 12 13:23:30 2023 -0700

• Revert "use hDownloadsServer() to get the correct download URL refs #31257" This reverts commit 092f837bff8a9b5951f18447d8a4314169d15e46.
  • src/hg/lib/trackHub.c - lines changed 6, context: html, text, full: html, text

21dc568ad9fe4e77547cb5f018fe6d3dab713430 Fri May 12 13:23:41 2023 -0700

• Revert "correct hgdownload path for chromAlias and chrom.sizes file for "curated" hub refs #31257" This reverts commit 07180b149b187970f5cb3f272c607f5b24b57dee.
  • src/hg/lib/trackHub.c - lines changed 21, context: html, text, full: html, text

89cdb67d6b259acf5514e5bec9314126fa543486 Fri May 12 13:31:50 2023 -0700

• make sure curated hubs are using hgdownload for downloads
  • src/hg/hgTracks/hgTracks.c - lines changed 5, context: html, text, full: html, text

4ed1b0b679e701fcb9f55f6b9ce1a57cc36210ae Fri May 12 15:00:37 2023 -0700

• cgiEncode the hubUrl's in the assumesHub statement
  • src/hg/hgSession/hgSession.c - lines changed 1, context: html, text, full: html, text

f4745cea41950290d1b583f7292996a4f1c09274 Fri May 12 16:25:44 2023 -0700

• some small tweaks to make sequence logo letters easier to read if zoomed way in, or the viewing range is restricted to a small range.
  • src/hg/hgTracks/wigTrack.c - lines changed 27, context: html, text, full: html, text

fdf156b7fd0e45b245329dbf6c4e1fc286d61941 Sat May 13 09:36:50 2023 -0700

• make sure the cart has the right "db" when a curated hub has been selected from hgGateway
  • src/hg/lib/hubConnect.c - lines changed 6, context: html, text, full: html, text