442e76e6f50e9c79f3dde2964d6f754511908e44
markd
  Sun May 14 17:32:02 2023 -0700
trim overlapping blocks as can happen when mapping protein to DNA alignments

diff --git src/utils/pslMap/tests/expected/testSpGencode.mapinfo src/utils/pslMap/tests/expected/testSpGencode.mapinfo
new file mode 100644
index 0000000..c963182
--- /dev/null
+++ src/utils/pslMap/tests/expected/testSpGencode.mapinfo
@@ -0,0 +1,2 @@
+#srcQName	srcQStart	srcQEnd	srcQSize	srcTName	srcTStart	srcTEnd	srcStrand	srcAligned	mappingQName	mappingQStart	mappingQEnd	mappingTName	mappingTStart	mappingTEnd	mappingStrand	mappingId	mappedQName	mappedQStart	mappedQEnd	mappedTName	mappedTStart	mappedTEnd	mappedStrand	mappedAligned	qStartTrunc	qEndTrunc	mappedPslLine
+Q9Y215-1#11541	0	175	175	Q9Y215-1	95	270	+	175	Q9Y215-1	0	455	ENST00000679838.1	95	1447	++	0	Q9Y215-1#11541	0	175	ENST00000679838.1	190	352	+	162	0	0	0